TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

ppe-miR828-5p

Organism

Prunus persica

Species

Mature miRNA Sequence(5'-3')

UCUUGCUCAAAUGAGUAUUCCA

miRBase

Precursor miRNA Sequence(5'-3')

AAUCCUCUUUGUAAUGUUUCUUGCUCAAAUGAGUAUUCCAAGCCACAGUUGCAUGCAGUUUGCAAGCACUGGUGCUUCUGCAAUUCUGAGAUGCUCAUUUCAGCAAGCAGCGUUACAAGAGGAAG

miRBase

Precursor miRNA Structure(5'-3') 

AA       U        U      C           C  ----------   CA    U  A      
  UCCUCUU GUAAUGUU CUUGCU AAAUGAGUAUU CA          AGC  CAGU GC UGCAG 
  ||||||| |||||||| |||||| ||||||||||| ||          |||  |||| || |||| U
  AGGAGAA CAUUGCGA GAACGA UUUACUCGUAG GU          UCG  GUCA CG ACGUG 
GA       -        C      C           A  CUUAACGUCU   UG    -  A

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

ath-miR828          UCUUGCUUAAAUGAGUAUUCCA
aly-miR828-5p       UCUUGCUUAAAUGAGUAUUCCA
lus-miR828a         UCUUGCUCAAAUGAGUGUUCCA
mes-miR828b         UCUUGCUCAAAUGAGUAUUCCA
mes-miR828a         UCUUGCUCAAAUGAGUAUUCCA
mdm-miR828b         UCUUGCUCAAAUGAGUAUUCCA
mdm-miR828a         UCUUGCUCAAAUGAGUAUUCCA
ptc-miR828b-5p      UCUUGCUCAAAUGAGUAUUCCA
ptc-miR828a         UCUUGCUCAAAUGAGUAUUCCA
ppe-miR828-5p       UCUUGCUCAAAUGAGUAUUCCA
gma-miR828b         UCUUGCUCAAAUGAGUAUUCCA
gma-miR828a         UCUUGCUCAAAUGAGUAUUCCA
vvi-miR828a         UCUUGCUCAAAUGAGUAUUCCA
mac-miR828          UCUUGCUCAAGUGAGUAUUCCA
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