TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

ppe-miR8125

Organism

Prunus persica

Species

Mature miRNA Sequence(5'-3')

CAGGAAAGAAUGUGAUGAGUA

miRBase

Precursor miRNA Sequence(5'-3')

UGCUCGUCACAUUCUUUCCUACCUUACUUUCACCGGUGUGUGAUGUGAUAGUAUGGCAGGAAAGAAUGUGAUGAGUA

miRBase

Precursor miRNA Structure(5'-3') 

                    A  U    U    CGGU 
UGCUCGUCACAUUCUUUCCU CC UACU UCAC    G
|||||||||||||||||||| || |||| ||||    U
AUGAGUAGUGUAAGAAAGGA GG AUGA AGUG    G
                    C  U    U    UAGU

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

ppe-miR8125      CAGGAAAGAAUGUGAUGAGUA-
mtr-miR2628      CAUGAAAGAAUG--AUGAGUAA
                 ** *********  *******