TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

ppe-miR7122b-5p

Organism

Prunus persica

Species

Mature miRNA Sequence(5'-3')

UUAUACAAUGAAAUCACGGUCG

miRBase

Precursor miRNA Sequence(5'-3')

GGGUUCAUUCCAUUUUUUUAUACAAUGAAAUCACGGUCGAGAAAAGAACAGAAGAUUCUUUCUAUCUCUCUCUCUCUACUCUCUGCCGUGUUUCCUUGUAUAAAGAGAUGUACUGGACCC

miRBase

Precursor miRNA Structure(5'-3') 

       UUC               U    U      C    AA   -AC   -    UC 
GGGUUCA   CAUUUUUUUAUACAA GAAA CACGGU GAGA  AGA   AGA AGAU  U
|||||||   ||||||||||||||| |||| |||||| ||||  |||   ||| ||||  U
CCCAGGU   GUAGAGAAAUAUGUU CUUU GUGCCG CUCU  UCU   UCU UCUA  U
       CAU               C    -      U    CA   CUC   C    UC

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

ppe-miR7122b-5p      UUAUACAAUGAAAUCACGGUCG
ppe-miR7122a-5p      UUAUACAAUGAAAUCACGGCCG
stu-miR7122-5p       UUAUACAGAGAAACCGCUGUCG
mdm-miR7122b         UUAUACAGAGAAAUCACGGUCG
mdm-miR7122a         UUAUACAGAGAAAUCACGGUCG
csi-miR3954b-5p      UUGGACAGAGAAAUCACGGUCA
csi-miR3954          -UGGACAGAGAAAUCACGGUCA
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