TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

ppe-miR395b-5p

Organism

Prunus persica

Species

Mature miRNA Sequence(5'-3')

GUUCCCUCAAACACUUCAUU

miRBase

Precursor miRNA Sequence(5'-3')

AUCAGAUAGCCCCUAGAGUUCCCUCAAACACUUCAUUGGAGAUUAUUAUGGGCAUUAUCUUAAUUAUGCCUCUCUCUCUCUACUUUCUACUGAAGUGUUUGGGGGGACCCUUGGAGUCAUUUGAU

miRBase

Precursor miRNA Structure(5'-3') 

       A  C  U  A                  U      -----UUAUUAU      UAUC 
AUCAGAU GC CC AG GUUCCCUCAAACACUUCA UGGAGA            GGGCAU    U
||||||| || || || |||||||||||||||||| ||||||            ||||||     
UAGUUUA UG GG UC CAGGGGGGUUUGUGAAGU AUCUUU            UCCGUA    A
       C  A  U  C                  C      CAUCUCUCUCUC      UUAA

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

zma-miR395a-5p      ---GUUCUCCUCAAACCACUUCAGUU
bdi-miR395e-5p      ---GUUCUCCUCAAAUCACUUCAGU-
ppe-miR395a-5p      ---GUUC-CCUCAAA-CACUUCAUU-
ppe-miR395b-5p      ---GUUC-CCUCAAA-CACUUCAUU-
ppe-miR395o         ---GUUC-CCUCAAA-CACUUCAUU-
mdm-miR395k         ---GUUU-CCUCAAA-CACUUCAUU-
aly-miR395d-5p      ---GUUC-UCCCGAA-CACUUCAUUG
pvi-miR395d         -UGAAGUGUUUGGGAGAACUC-----
gma-miR395h         AUGAAGUGUUUGGGAGAACUC-----
                                  *  ***