TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

ppe-miR171e

Organism

Prunus persica

Species

Mature miRNA Sequence(5'-3')

UUAUUGAACCGGACCAAUAUC

miRBase

Precursor miRNA Sequence(5'-3')

AGUGGCACGUGAUAUUGGCACGGCUCAAUCAAAAAGCAGAGCUCAAGCACUUAGAGCACUGCUUUCUUAUUGAACCGGACCAAUAUCCCGUUAAACC

miRBase

Precursor miRNA Structure(5'-3') 

A  GGC   U        CA   C     CAA       A    AAG 
 GU   ACG GAUAUUGG  CGG UCAAU   AAAGCAG GCUC   C
 ||   ||| ||||||||  ||| |||||   ||||||| ||||   A
 CA   UGC CUAUAACC  GCC AGUUA   UUUCGUC CGAG   U
C  AAU   C        AG   A     UUC       A    AUU

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

sly-miR171b-5p      AUAUUGGUGCGGUUCAAUUAG-
sly-miR171c         -UAUUGGUGCGGUUCAAUGAGA
ppe-miR171e         UUAUUGAACCGGACCAAUAUC-
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