TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

pha-miRN2518

Organism

Panicum hallii

Species

Mature miRNA Sequence(5'-3')

UCCAACCCGAUCUAAGCUGUU

PmiREN

Precursor miRNA Sequence(5'-3')

ATGGTCGATCCCAGCAAGCACAGCTCGGATCTGGCTGGCCCTGAGCCTCTGGCGTTCAGTTCCAACCCGATCTAAGCTGTTCCTGCCGGATCTTGGCCGCC

PmiREN

Precursor miRNA Structure(5'-3') 

-AU    --     CA   A C      C     U  C   CC      CU 
   GGUC  GAUCC  GCA G ACAGCU GGAUC GG UGG  CUGAGC  C
   ||||  |||||  ||| | |||||| ||||| || |||  ||||||  U
   CCGG  CUAGG  CGU C UGUCGA UCUAG CC ACC  GACUUG  C
CCG    UU     -C   C U      A     C  A   UU      CG

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

gma-miR4408       UAACAACAUUGGAUGAGGGUUGGA
pha-miRN2518      ---UCCAACCCGAUCUAAGCUGUU
                         *   ***    * **