TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

osa-miR528-3p

Organism

Oryza sativa

Species

Mature miRNA Sequence(5'-3')

CCUGUGCUUGCCUCUUCCAUU

miRBase

Precursor miRNA Sequence(5'-3')

AGUGGAAGGGGCAUGCAGAGGAGCAGGAGAUUCAGUUUGAAGCUGGACUUCACUUUUGCCUCUCUCUCCUGUGCUUGCCUCUUCCAUU

miRBase

Precursor miRNA Structure(5'-3') 

A            U   G     CA     UU   -UU     C 
 GUGGAAGGGGCA GCA AGGAG  GGAGA  CAG   UGAAG U
 |||||||||||| ||| |||||  |||||  |||   ||||| G
 UACCUUCUCCGU CGU UCCUC  UCUCU  GUU   ACUUC C
U            U   G     --     CC   UUC     A

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

zma-miR528b-3p      CCUGUGCCUGCCUCUUCCAUU
bdi-miR528-3p       CCUGUGCCUGCCUCUUCCAUU
zma-miR528a-3p      CCUGUGCCUGCCUCUUCCAUU
osa-miR528-3p       CCUGUGCUUGCCUCUUCCAUU
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