TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

osa-miR419

Organism

Oryza sativa

Species

Mature miRNA Sequence(5'-3')

UGAUGAAUGCUGACGAUGUUG

miRBase

Precursor miRNA Sequence(5'-3')

UCUUCUCUGUUCUCUGUGAUGAAUGCUGACGAUGUUGUAGAUGUGAACUUUUUUUUUCUCUGUUGUCUAUGAUGAAUGCUUGUUGUCCUGGAGAUAUUGUAGA

miRBase

Precursor miRNA Structure(5'-3') 

UCU   - -UGU      U     -AU  UGACGAU         GUG   UUUUU 
   UCU C    UCUCUG GAUGA   GC       GUUGUAGAU   AAC     U
   ||| |    |||||| |||||   ||       |||||||||   |||     U
   AGA G    AGAGGU CUGUU   CG       UAGUAUCUG   UUG     C
---   U UUAU      C     GUU  ---UAAG         ---   UCUCU

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

ath-miR419      UUAUGAAUGCUGAGGAUGUUG
osa-miR419      UGAUGAAUGCUGACGAUGUUG
                * *********** *******