TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

osa-miR417

Organism

Oryza sativa

Species

Mature miRNA Sequence(5'-3')

GAAUGUAGUGAAUUUGUUCCA

miRBase

Precursor miRNA Sequence(5'-3')

UUUGGUACAAAUUUGAAUUCUUAAAUCUCUUAUAUUAUGAUAUGAAUGUAGUGAAUUUGUUCCAUG

miRBase

Precursor miRNA Structure(5'-3') 

UU   U        ---GA    UUAA   UCUU 
  UGG ACAAAUUU     AUUC    AUC    A
  ||| ||||||||     ||||    |||    U
  ACC UGUUUAAG     UAAG    UAG    U
GU   U        UGAUG    --UA   UAUU

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

ath-miR417      GAAGGUAGUGAAUUUGUUCGA
osa-miR417      GAAUGUAGUGAAUUUGUUCCA
                *** *************** *