TarDB

Precursor miRNA Sequence(5'-3')

GCGGGCAUGCUUUCCACAGGCUUUCUUGAACUGUGAACUCGUGGGGGUGUAUGUGCUCAUGUUGGGAUUGUGGUCGGUGGCCUCCAAUUCUCUGAAAAGAAAGCUGAAUUGUCGAGCUCCCCGUUCUGUCUUUGGUCGUCUCUACCUGUUGAUGGUUCAAGAAAGCCCAUGGAAACCAUGCCGC

miRBase

Precursor miRNA Structure(5'-3')

    G    C      CA                G   UC         UAUGU  U  UGUU     UGU  U   U  -C   --      -U  GAA 
GCGG CAUG UUUCCA  GGCUUUCUUGAACUGU AAC  GUGGGGGUG     GC CA    GGGAU   GG CGG GG  CUC  CAAUUC  CU   A
|||| |||| ||||||  |||||||||||||||| |||  |||||||||     || ||    |||||   || ||| ||  |||  ||||||  ||    
CGCC GUAC AAAGGU  CCGAAAGAACUUGGUA UUG  CAUCUCUGC     UG GU    UUCUG   CU GCC CC  GAG  GUUAAG  GA   A
    -    C      AC                G   UC         -----  -  ----     --U  U   -  UC   CU      UC  AAG

osa-miR396e-3p AUGGUUCAAGAAAGCCCAUGGAAA bdi-miR396b-3p ---GUUCAAGAAAGCCCAUGGAAA bdi-miR396a-3p ---GUUCAAGAAAGUCCUUGGAAA osa-miR396f-3p AUAGUUCAAGAAAGUCCUUGGAAA smo-miR396 ----UUCCACGGCUUUCUUGAACC *** * * ** *

TarDB: A miRNA Target Database in Plants.

TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.

miRNA ID

Organism

Mature miRNA Sequence(5'-3')

Precursor miRNA Sequence(5'-3')

Precursor miRNA Structure(5'-3')

Homologous Mature miRNAs miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.