TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

osa-miR2118p

Organism

Oryza sativa

Species

Mature miRNA Sequence(5'-3')

UUCCCGAUGCCUCCCAUGCCUA

miRBase

Precursor miRNA Sequence(5'-3')

GUGGGUCAGGAAGAGGAAGAAAAGAGUACCUAAGAGUAGUGGGCAUGGGAACAUGGAGGAAAGUUCAAACUCUUCUUCCCCUCUAAAUUAGGGGGGUCGACUUGUUUUGAUGUUUUCCCGAUGCCUCCCAUGCCUAUUGUCCUUAGGUGCUCCUUCCUCUUCCCUUUGGCACAC

miRBase

Precursor miRNA Structure(5'-3') 

   G    ---           AAAA           A -              -A   G A      -U     - UCU  UU          
GUG GUCA   GGAAGAGGAAG    GAGUACCUAAG G UAGUGGGCAUGGGA  CAU G GGAAAG  UCAAA C   UC  CCCCUCUAA 
||| ||||   |||||||||||    ||||||||||| | ||||||||||||||  ||| | ||||||  ||||| |   ||  |||||||| A
CAC CGGU   CCUUCUCCUUC    CUCGUGGAUUC C GUUAUCCGUACCCU  GUA C CCUUUU  AGUUU G   AG  GGGGGGAUA 
   A    UUC           ----           - U              CC   G -      GU     U UUC  CU

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

osa-miR2118m      UUCCUGAUGCCUCCCAUUCCUA
bdi-miR2118b      UUCCUGAUGCCUCCCAUUCCUA
osa-miR2118j      UUCCUGAUGCCUCCCAUUCCUA
osa-miR2118f      UUCCUGAUGCCUCCCAUUCCUA
zma-miR2118e      UUCCUGAUGUCUCCCAUUCCUA
osa-miR2118h      UUCCUGAUGCCUCUCAUUCCUA
osa-miR2118k      UUCCUGAUGCCUCUCAUUCCUA
zma-miR2118a      UUCCUGAUGCCUCUCAUUCCUA
osa-miR2118p      UUCCCGAUGCCUCCCAUGCCUA
osa-miR2118d      UUCCUGAUGCCUCCCAUGCCUA
osa-miR2118b      UUCCCGAUGCCUCCCAUUCCUA
osa-miR2118n      UUCCCGAUGCCUCCCAUUCCUA
zma-miR2118b      UUCCCGAUGCCUCCCAUUCCUA
osa-miR2118a      UUCUCGAUGCCUCCCAUUCCUA
bdi-miR2118a      UUUCCGAUGCCUCCCAUUCCUA
osa-miR2118c      UUCCCGAUGCCUCCUAUUCCUA
osa-miR2118q      UUCCCGAUGCCUCCUAUUCCUA
zma-miR2118g      UUCCUGAUGCCUCCUAUUCCUA
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