TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



osa-miR172d-3p
Oryza sativa

Species
AAACAGUCGGUGCUUGCAGGUGCAGCACCAUCAAGAUUCACAUCGAGUUCAUCCCUAAACGAGAUCGAGGUUGGCUGACUAUAUGUGAUGAGAAUCUUGAUGAUGCUGCAUCAGCAAACGCUCGACUACU

miRBase
AAAC     -   C    A         C           A     -----   U  U  CUAAA  A 
    AGUCG GUG UUGC GGUGCAGCA CAUCAAGAUUC CAUCG     AGU CA CC     CG G
    ||||| ||| |||| ||||||||| ||||||||||| |||||     ||| || ||     ||  
    UCAGC CGC AACG CUACGUCGU GUAGUUCUAAG GUAGU     UCA GU GG     GC C
-UCA     U   A    A         A           A     GUAUA   -  C  UUGGA  U 

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

gma-miR172d                  --GGAAUCUUGAUGAUGCUGCAGCAG
gma-miR172e                  --GGAAUCUUGAUGAUGCUGCAGCAG
ptc-miR172g-3p               --GGAAUCUUGAUGAUGCUGCAG---
ptc-miR172h-3p               --GGAAUCUUGAUGAUGCUGCAG---
vvi-miR172c                  --GGAAUCUUGAUGAUGCUGCAG---
gma-miR172c                  --GGAAUCUUGAUGAUGCUGCAG---
rco-miR172                   --GGAAUCUUGAUGAUGCUGCAG---
lus-miR172e                  --GGAAUCUUGAUGAUGCUGCAG---
lus-miR172i                  --GGAAUCUUGAUGAUGCUGCAG---
mdm-miR172l                  --GGAAUCUUGAUGAUGCUGCAG---
mes-miR172e                  --GGAAUCUUGAUGAUGCUGCAG---
mes-miR172f                  --GGAAUCUUGAUGAUGCUGCAG---
stu-miR172d-3p               --GGAAUCUUGAUGAUGCUGCAG---
ppe-miR172d                  --GGAAUCUUGAUGAUGCUGCAG---
sly-miR172d                  --GGAAUCUUGAUGAUGCUGCAG---
csi-miR172c-3p               -UGGAAUCUUGAUGAUGCUGCAG---
tcc-miR172a                  --GGAAUCUUGAUGAUGCUGCA----
cpa-miR172a                  -GGGAAUCUUGAUGAUGCUGCA----
cpa-miR172b                  -GGGAAUCUUGAUGAUGCUGCA----
sbi-miR172b                  --GGAAUCUUGAUGAUGCUGCA----
atr-miR172                   --GGAAUCUUGAUGAUGCUGCA----
bra-miR172d                  --GGAAUCUUGAUGAUGCUGCAU---
bra-miR172h                  --GGAAUCUUGAUGAUGCUGCAU---
bra-miR172i                  --GGAAUCUUGAUGAUGCUGCAU---
bra-miR172j                  --GGAAUCUUGAUGAUGCUGCAU---
cru-miR172e                  --GGAAUCUUGAUGAUGCUGCAU---
mac-miR172g                  --GGAAUCUUGAUGAUGCUGCAU---
pvi-miR172e                  --GGAAUCUUGAUGAUGCUGCAU---
pvi-miR172f                  --GGAAUCUUGAUGAUGCUGCAU---
sit-miR172c                  --GGAAUCUUGAUGAUGCUGCAU---
ath-miR172e-3p               --GGAAUCUUGAUGAUGCUGCAU---
osa-miR172b                  --GGAAUCUUGAUGAUGCUGCAU---
zma-miR172e                  --GGAAUCUUGAUGAUGCUGCAU---
ptc-miR172d                  --GGAAUCUUGAUGAUGCUGCAU---
ptc-miR172e                  --GGAAUCUUGAUGAUGCUGCAU---
tcc-miR172c                  --GGAAUCUUGAUGAUGCUGCAU---
bdi-miR172b                  --GGAAUCUUGAUGAUGCUGCAU---
gma-miR172i-3p               --GGAAUCUUGAUGAUGCUGCAU---
gma-miR172l                  --GGAAUCUUGAUGAUGCUGCAU---
lus-miR172g                  --GGAAUCUUGAUGAUGCUGCAU---
mdm-miR172i                  --GGAAUCUUGAUGAUGCUGCAU---
mdm-miR172j                  --GGAAUCUUGAUGAUGCUGCAU---
mdm-miR172k                  --GGAAUCUUGAUGAUGCUGCAU---
ppe-miR172c                  --GGAAUCUUGAUGAUGCUGCAU---
aly-miR172e-3p               ---GAAUCUUGAUGAUGCUGCAU---
gma-miR172k                  --UGAAUCUUGAUGAUGCUGCAU---
fve-miR172a                  --AGAAUCUUGAUGAUGCUGCAU---
csi-miR172b-3p               --AGAAUCUUGAUGAUGCUGCAU---
fve-miR172c                  --AGAAUCUUGAUGAUGCUGCAU---
fve-miR172b                  --AGAAUCUUGAUGAUGCUGCAU---
mdm-miR172p                  --AGAAUCUUGAUGAUGCUGCAU---
ppe-miR172b                  --AGAAUCUUGAUGAUGCUGCAU---
ppe-miR172a-3p               --AGAAUCUUGAUGAUGCUGCAU---
stu-miR172e-3p               --AGAAUCUUGAUGAUGCUGCAU---
stu-miR172a-3p               --AGAAUCUUGAUGAUGCUGCAU---
stu-miR172b-3p               --AGAAUCUUGAUGAUGCUGCAU---
mes-miR172d                  --AGAAUCUUGAUGAUGCUGCAU---
mes-miR172b                  --AGAAUCUUGAUGAUGCUGCAU---
mdm-miR172h                  --AGAAUCUUGAUGAUGCUGCAU---
mdm-miR172g                  --AGAAUCUUGAUGAUGCUGCAU---
mdm-miR172f                  --AGAAUCUUGAUGAUGCUGCAU---
mdm-miR172e                  --AGAAUCUUGAUGAUGCUGCAU---
mdm-miR172d                  --AGAAUCUUGAUGAUGCUGCAU---
lus-miR172h                  --AGAAUCUUGAUGAUGCUGCAU---
lus-miR172f                  --AGAAUCUUGAUGAUGCUGCAU---
lus-miR172d                  --AGAAUCUUGAUGAUGCUGCAU---
lus-miR172c                  --AGAAUCUUGAUGAUGCUGCAU---
lus-miR172b                  --AGAAUCUUGAUGAUGCUGCAU---
lus-miR172a                  --AGAAUCUUGAUGAUGCUGCAU---
mes-miR172a                  --AGAAUCUUGAUGAUGCUGCAU---
gma-miR172h-3p               --AGAAUCUUGAUGAUGCUGCAU---
mtr-miR172c-3p               --AGAAUCUUGAUGAUGCUGCAU---
mtr-miR172b                  --AGAAUCUUGAUGAUGCUGCAU---
bdi-miR172a-3p               --AGAAUCUUGAUGAUGCUGCAU---
tcc-miR172e                  --AGAAUCUUGAUGAUGCUGCAU---
tcc-miR172b                  --AGAAUCUUGAUGAUGCUGCAU---
aly-miR172b-3p               --AGAAUCUUGAUGAUGCUGCAU---
aly-miR172a-3p               --AGAAUCUUGAUGAUGCUGCAU---
sly-miR172b                  --AGAAUCUUGAUGAUGCUGCAU---
sly-miR172a                  --AGAAUCUUGAUGAUGCUGCAU---
ptc-miR172f                  --AGAAUCUUGAUGAUGCUGCAU---
ptc-miR172c                  --AGAAUCUUGAUGAUGCUGCAU---
ptc-miR172b-3p               --AGAAUCUUGAUGAUGCUGCAU---
ptc-miR172a                  --AGAAUCUUGAUGAUGCUGCAU---
gma-miR172b-3p               --AGAAUCUUGAUGAUGCUGCAU---
gma-miR172a                  --AGAAUCUUGAUGAUGCUGCAU---
osa-miR172d-3p               --AGAAUCUUGAUGAUGCUGCAU---
osa-miR172a                  --AGAAUCUUGAUGAUGCUGCAU---
ath-miR172b-3p               --AGAAUCUUGAUGAUGCUGCAU---
ath-miR172a                  --AGAAUCUUGAUGAUGCUGCAU---
zos-miR172f                  --AGAAUCUUGAUGAUGCUGCAU---
zos-miR172e                  --AGAAUCUUGAUGAUGCUGCAU---
zos-miR172d                  --AGAAUCUUGAUGAUGCUGCAU---
zos-miR172c                  --AGAAUCUUGAUGAUGCUGCAU---
zos-miR172b                  --AGAAUCUUGAUGAUGCUGCAU---
zos-miR172a                  --AGAAUCUUGAUGAUGCUGCAU---
spo-miR172b                  --AGAAUCUUGAUGAUGCUGCAU---
spo-miR172a                  --AGAAUCUUGAUGAUGCUGCAU---
sit-miR172b                  --AGAAUCUUGAUGAUGCUGCAU---
sit-miR172a                  --AGAAUCUUGAUGAUGCUGCAU---
pvi-miR172d                  --AGAAUCUUGAUGAUGCUGCAU---
pvi-miR172c                  --AGAAUCUUGAUGAUGCUGCAU---
pvi-miR172b                  --AGAAUCUUGAUGAUGCUGCAU---
pvi-miR172a                  --AGAAUCUUGAUGAUGCUGCAU---
pha-miR172                   --AGAAUCUUGAUGAUGCUGCAU---
mac-miR172q                  --AGAAUCUUGAUGAUGCUGCAU---
mac-miR172p                  --AGAAUCUUGAUGAUGCUGCAU---
mac-miR172o                  --AGAAUCUUGAUGAUGCUGCAU---
mac-miR172n                  --AGAAUCUUGAUGAUGCUGCAU---
mac-miR172m                  --AGAAUCUUGAUGAUGCUGCAU---
mac-miR172l                  --AGAAUCUUGAUGAUGCUGCAU---
mac-miR172k                  --AGAAUCUUGAUGAUGCUGCAU---
mac-miR172j                  --AGAAUCUUGAUGAUGCUGCAU---
mac-miR172i                  --AGAAUCUUGAUGAUGCUGCAU---
mac-miR172f                  --AGAAUCUUGAUGAUGCUGCAU---
mac-miR172d                  --AGAAUCUUGAUGAUGCUGCAU---
mac-miR172c                  --AGAAUCUUGAUGAUGCUGCAU---
mac-miR172b                  --AGAAUCUUGAUGAUGCUGCAU---
mac-miR172a                  --AGAAUCUUGAUGAUGCUGCAU---
esa-miR172a                  --AGAAUCUUGAUGAUGCUGCAU---
cru-miR172d                  --AGAAUCUUGAUGAUGCUGCAU---
cru-miR172b                  --AGAAUCUUGAUGAUGCUGCAU---
bra-miR172g                  --AGAAUCUUGAUGAUGCUGCAU---
bra-miR172e                  --AGAAUCUUGAUGAUGCUGCAU---
bra-miR172b                  --AGAAUCUUGAUGAUGCUGCAU---
bra-miR172a                  --AGAAUCUUGAUGAUGCUGCAU---
bol-miR172c                  --AGAAUCUUGAUGAUGCUGCAU---
bol-miR172a                  --AGAAUCUUGAUGAUGCUGCAU---
dca-miR172-b2.0r1-16376      --AGAAUCUUGAUGAUGCUGCAU---
dca-miR172-b2.0r1-5508       --AGAAUCUUGAUGAUGCUGCAU---
mtr-miR172d-3p               --AGAAUCUUGAUGAUGCUGCA----
mdm-miR172c                  --AGAAUCUUGAUGAUGCUGCA----
mdm-miR172b                  --AGAAUCUUGAUGAUGCUGCA----
mdm-miR172a                  --AGAAUCUUGAUGAUGCUGCA----
gma-miR172f                  --AGAAUCUUGAUGAUGCUGCA----
csi-miR172a-3p               --AGAAUCUUGAUGAUGCUGCA----
sbi-miR172d                  --AGAAUCUUGAUGAUGCUGCA----
sbi-miR172a                  --AGAAUCUUGAUGAUGCUGCA----
dca-miR172-b2.0r1-23926      --AGAAUCUUGAUGAUGCUGCAG---
bra-miR172c                  --AGAAUCUUGAUGAUGCUGCAG---
bra-miR172f                  --AGAAUCUUGAUGAUGCUGCAG---
cru-miR172a                  --AGAAUCUUGAUGAUGCUGCAG---
cru-miR172c                  --AGAAUCUUGAUGAUGCUGCAG---
ath-miR172c                  --AGAAUCUUGAUGAUGCUGCAG---
ath-miR172d-3p               --AGAAUCUUGAUGAUGCUGCAG---
aly-miR172c-3p               --AGAAUCUUGAUGAUGCUGCAG---
aly-miR172d-3p               --AGAAUCUUGAUGAUGCUGCAG---
mdm-miR172m                  --AGAAUCUUGAUGAUGCUGCAG---
mdm-miR172n                  --AGAAUCUUGAUGAUGCUGCAG---
mdm-miR172o                  --AGAAUCUUGAUGAUGCUGCAG---
aly-miR172f-3p               --AGAAUCUUGAUGAUGCUGCAG---
sly-miR172c                  --AGAAUCUUGAUGAUGCUGCAG---
bol-miR172b                  --AGAAUCUUGAUGAUGCUGCA----
mac-miR172e                  --AGAAUCUUGAUGAUGCUGCAC---
mac-miR172h                  --AGAAUCUUGAUGAUGCUGCAC---
zma-miR172a                  --AGAAUCUUGAUGAUGCUGCA----
mtr-miR172a                  --AGAAUCCUGAUGAUGCUGCAG---
bdi-miR172d                  --AGAAUCCUGAUGAUGCUGCAG---
ptc-miR172i                  --AGAAUCCUGAUGAUGCUGCAA---
sbi-miR172f                  --AGAAUCCUGAUGAUGCUGCAC---
pvi-miR172g                  --AGAAUCCUGAUGAUGCUGCAU---
pvi-miR172h                  --AGAAUCCUGAUGAUGCUGCAU---
tcc-miR172d                  --AGAAUCCUGAUGAUGCUGCAU---
zma-miR172d-3p               --AGAAUCUUGAUGAUGCUGCA----
zma-miR172b-3p               --AGAAUCUUGAUGAUGCUGCA----
zma-miR172c-3p               --AGAAUCUUGAUGAUGCUGCA----
sbi-miR172c                  --AGAAUCUUGAUGAUGCUGCA----
stu-miR172c-3p               --AGAAUCUUGAUGAUGCUGC-----
esa-miR172b                  ---GAAUCUUAAUGAUACUGCAUC--
mes-miR172c                  --UGAAUCUUGAUGAUGCUACGC---
lus-miR172j                  GCAGCAUCAUCAAGAUUCCCA-----
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