TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

osa-miR167c-3p

Organism

Oryza sativa

Species

Mature miRNA Sequence(5'-3')

GGUCAUGCUGCGGCAGCCUCACU

miRBase

Precursor miRNA Sequence(5'-3')

UGUCCAAGGGAACGAGUGAAGCUGCCAGCAUGAUCUAGCUCUGAAUGAUCAACAAGAUGUGCUCCCACACUGCCUUCCUGUGGAUCUUGAGCUGUUGCUAGUCUUGUGGUCAUGCCUUGCUAGGUCAUGCUGCGGCAGCCUCACUUCUUCCCAUUGUUGGGCA

miRBase

Precursor miRNA Structure(5'-3') 

       ----     C      A      --             UCUGA       A      ------GU    -----     CUG 
UGUCCAA    GGGAA GAGUGA GCUGCC  AGCAUGAUCUAGC     AUGAUCA CAAGAU        GCUC     CCACA   C
|||||||    ||||| |||||| ||||||  |||||||||||||     ||||||| ||||||        ||||     |||||   C
ACGGGUU    CCCUU UUCACU CGACGG  UCGUACUGGAUCG     UACUGGU GUUCUG        CGAG     GGUGU   C
       GUUA     C      C      CG             UUCCG       -      AUCGUUGU    UUCUA     CCU

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

aly-miR167b-3p      GGUCAUGCUCUGACAGCCUCACU
csi-miR167e-3p      GGUCAUGCUCUGACAGCCUCACU
stu-miR167c-3p      GGUCAUGCUCGGACAGCCUCACU
osa-miR167c-3p      GGUCAUGCUGCGGCAGCCUCACU
zma-miR167d-3p      GGUCAUGCUGCUGCAGCCUCACU
zma-miR167c-3p      GAUCAUGCUGUGGCAGCCUCACU
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