TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

osa-miR1430

Organism

Oryza sativa

Species

Mature miRNA Sequence(5'-3')

UGGUGAGCCUUCCUGGCUAAG

miRBase

Precursor miRNA Sequence(5'-3')

AUGAGGAGAUUGCCUCUGUUAGCCAAGAAUGGCUUGCCUAUCUCCACUAUUUGGUUCAUCACUGGAACACACUUGGGGUUCUCAGAUGGUGGAUGAAAUAUGGAAGAUGGUGAGCCUUCCUGGCUAAGAGAGUGAUUCUCAU

miRBase

Precursor miRNA Structure(5'-3') 

AUGAG    U GC    G       A   U        U    -   C     G        -   -    A AC 
     GAGA U  CUCU UUAGCCA GAA GGCUUGCC AUCU CCA UAUUU GUUCAUCA CUG GAAC C  U
     |||| |  |||| ||||||| ||| |||||||| |||| ||| ||||| |||||||| ||| |||| |   
     CUCU A  GAGA AAUCGGU CUU CCGAGUGG UAGA GGU AUAAA UAGGUGGU GAC CUUG G  G
---UA    U GU    G       C   -        -    A   -     G        A   U    - GG

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

bdi-miR169j-3p      UGGUCAAGCCUUCCUGACUAGG
osa-miR1430         UGGU-GAGCCUUCCUGGCUAAG
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