TarDB

Precursor miRNA Sequence(5'-3')

CCAAGCAAUAUACUCCCGCCGGUCCUAUUUAUAAGAGAAUUUUUUGUCAACAAAAGUUGAUGUAUCUAGUUAAAAAUUCAGUCCAAAUACUGUUGACCUAAACUUCUCUUAUAAAUAGGACCGGAGGGAGUACUUCACAUAAC

miRBase

Precursor miRNA Structure(5'-3')

-CCAAGCAAUA       G                     U   UU       AAAG   AUGUAUCUAGU 
           UACUCCC CCGGUCCUAUUUAUAAGAGAA UUU  GUCAACA    UUG           U
           ||||||| ||||||||||||||||||||| |||  |||||||    |||            
           AUGAGGG GGCCAGGAUAAAUAUUCUCUU AAA  CAGUUGU    AAC           A
CAAUACACUUC       A                     C   UC       CAUA   CUGACUUAAAA

mtr-miR5281e -UCUUAUAAAUAGGACCGGAGGGAG mtr-miR5281f -UCUUAUAAAUAGGACCGGAGGGAG mtr-miR5281d -UCUUAUAAAUAGGACCGGAGGGAG mtr-miR5281c -UCUUAUAAAUAGGACCGGAGGGAG mtr-miR5281b -UCUUAUAAAUAGGACCGGAGGGAG bdi-miR5281b -UCUUAUAAAUAGGAACGGAGG--- bdi-miR5281a -UCUUAUAAAUAGGAACGGAGG--- mtr-miR5281a CUCUUGUAAAUAGGAUCGGAGGGA- ptc-miR7815 -CUCUUCAAAUAA-AUCGUGGGA-- * ***** * ** **

TarDB: A miRNA Target Database in Plants.

TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.

miRNA ID

Organism

Mature miRNA Sequence(5'-3')

Precursor miRNA Sequence(5'-3')

Precursor miRNA Structure(5'-3')

Homologous Mature miRNAs miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.