TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

mtr-miR5268b

Organism

Medicago truncatula

Species

Mature miRNA Sequence(5'-3')

CCAGAGUGGAAUGAAGAUAUGGUU

miRBase

Precursor miRNA Sequence(5'-3')

UAGUAUAAACCAGAGUGGAAUGAAGAUAUGGUUAUCAGUGAGGCAGUGGUAUGACAACAAAGUCUGAAUGUUUCUGGAAGCCAUGUUGAUUAAGAAAUUUCGGUUUAAGAGA

miRBase

Precursor miRNA Structure(5'-3') 

UAGUA      A    GGAA   -A         A   GU      GUGG  U   AA 
     UAAACC GAGU    UGA  GAUAUGGUU UCA  GAGGCA    UA GAC  C
     |||||| ||||    |||  ||||||||| |||  ||||||    || |||   
     AUUUGG UUUA    AUU  UUGUACCGA GGU  CUUUGU    GU CUG  A
AGAGA      C    AAGA   AG         A   --      --AA  -   AA

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

mtr-miR5268a      CCAGAGUGGAAUGAAGAUAUGGUU
mtr-miR5268b      CCAGAGUGGAAUGAAGAUAUGGUU
osa-miR5492       --AGAA-GGAGAAUAGAUAUGGUU
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