TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

mtr-miR5037a

Organism

Medicago truncatula

Species

Mature miRNA Sequence(5'-3')

AACCCUCAAAGGCUUCCACGG

miRBase

Precursor miRNA Sequence(5'-3')

AGCAUUGAGUAACCCUCAAAGGCUUCCACGGCACCAAGUUACAUGUAAAUGUGAAGUCGUGGAAGUGCUUUUUGGGUUUCUCAAGUC

miRBase

Precursor miRNA Structure(5'-3') 

A  A     U     UC    -           ACCAAG      G 
 GC UUGAG AACCC  AAAG GCUUCCACGGC      UUACAU U
 || ||||| |||||  |||| |||||||||||      ||||||  
 UG AACUC UUGGG  UUUC UGAAGGUGCUG      AGUGUA A
C  -     U     UU    G           -----A      A

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

mtr-miR5037a      AACCCUCAAAGGCUUCCACGG
mtr-miR5037b      AACCCUCAAAGGCUUCCACGG
mtr-miR5037c      AACCCUCAAAGGCUUCCACGG
gma-miR5037b      AACCCUCAAAGGCUUCCUAG-
                  *****************  *