TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

mtr-miR2592bn-3p

Organism

Medicago truncatula

Species

Mature miRNA Sequence(5'-3')

GGAAAACAUGAAUGUCGGGUG

miRBase

Precursor miRNA Sequence(5'-3')

CUCGAGCAUUUCGCUCGGCAUUCAUGUUUUUCCUUUGAAAAUAUUAAAUUCUUGUUGGGUUGGUUUAGAUGAAGGUAUUAAGUGUCAAGAAAUGAACCUCAUUUCGUUGGCACUUGAAUACCAUCAUCUAAAGCACACCUAACAAAAAUUUAUUCUUUUCAAAGGAAAACAUGAAUGUCGGGUGAAAUGCUUGA

miRBase

Precursor miRNA Structure(5'-3') 

C                             U          UAU      C         -  G         A     -          -         
 UCGAGCAUUUCGCUCGGCAUUCAUGUUUU CCUUUGAAAA   UAAAUU UUGUUGGGU UG UUUAGAUGA GGUAU UAAGUGUCAA GAAAUGAA 
 ||||||||||||||||||||||||||||| ||||||||||   |||||| ||||||||| || ||||||||| ||||| |||||||||| ||||||| C
 AGUUCGUAAAGUGGGCUGUAAGUACAAAA GGAAACUUUU   AUUUAA AACAAUCCA AC AAAUCUACU CCAUA GUUCACGGUU CUUUACUC 
-                             -          CUU      A         C  G         A     A          G

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

mtr-miR2592bm-3p      GGAAAACAU-GAAUGUCGGGUG--
mtr-miR2592bn-3p      GGAAAACAU-GAAUGUCGGGUG--
mdm-miR10996a         --ACACCAUCGCAUCUCAUGUUCC
mdm-miR10996b         --UCACCAUUGCAUCUCAUGUUCC
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