TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

mes-miR3627

Organism

Manihot esculenta

Species

Mature miRNA Sequence(5'-3')

UUGUCGCAGGAGCGGUGGCACC

miRBase

Precursor miRNA Sequence(5'-3')

UGGGGGAAUCUUGUCGCAGGAGCGGUGGCACCUGCCGGCCGAUUCAUCGGAAAAGUGCCAGCGUCCUUUGACAAGACUCCCUGC

miRBase

Precursor miRNA Structure(5'-3') 

UG     A        C    G  G      -CUG    CCG 
  GGGGA UCUUGUCG AGGA CG UGGCAC    CCGG   A
  ||||| |||||||| |||| || ||||||    ||||    
  UCCCU AGAACAGU UCCU GC ACCGUG    GGCU   C
CG     C        U    -  G      AAAA    ACU

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

mes-miR3627          UUGUCGCAGGAGCGGUGGCACC
csi-miR3627b-3p      UUGUCGCAGGAGCGUUGGCACC
                     ************** *******