TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

mes-miR1446b

Organism

Manihot esculenta

Species

Mature miRNA Sequence(5'-3')

UGAACUCUCCCCCUCAACGGCU

miRBase

Precursor miRNA Sequence(5'-3')

GGAUUUUUGGAGAUCUAACUUUCUCUGAACUCUCCCCCUCAACGGCUACUCUAGCUUCUCUCAAAUUUCAAGCGUUUUGGCGUACUUAGCAGUUGAGGUGAGGAGUUCAGCAAAAGUUGGCUCUCGUGUAAUUAUG

miRBase

Precursor miRNA Structure(5'-3') 

--G    UUUG    U        CU         C C       G    CUCUA   UCUCUCAAAU 
   GAUU    GAGA CUAACUUU  CUGAACUCU C CCUCAAC GCUA     GCU          U
   ||||    |||| ||||||||  ||||||||| | ||||||| ||||     |||           
   UUAA    CUCU GGUUGAAA  GACUUGAGG G GGAGUUG CGAU     CGG          A
GUA    UGUG    C        AC         A U       A    UCAUG   UUUUGCGAAC

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

mes-miR1446b      UGAACUCUCCCCCUCAACGGCU-
gra-miR1446       --AACUCUCUCCCUCAAAGGCUA
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