TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

mdm-miR827

Organism

Malus domestica

Species

Mature miRNA Sequence(5'-3')

UUAGAUGACCAUCAACGAACA

miRBase

Precursor miRNA Sequence(5'-3')

UUUGCAGCAGUGGAUAUGUUUGUUGCUGGUCACCUAGUUAUUCCAUGGUUCCAUCCAUCUGCUGGCUUCAAUAUAUAAUUUGUGUUUGUAUAUGUUGUAUAUAUACAUGCAGUAUUGUAUAUUUGACCCAUGGCGGACGUUCUGAUUAGAUGACCAUCAACGAACACAUUCAUGAUGCAAG

miRBase

Precursor miRNA Structure(5'-3') 

U     GCA      A         C      C       UUCCAUGGUUCCAUCCAUCUGCUGGCUUCAAUAUAUAAUUUGUGUUUGUA 
 UUGCA   GUGGAU UGUUUGUUG UGGUCA CUAGUUA                                                  U
 |||||   |||||| ||||||||| |||||| |||||||                                                   
 AACGU   UACUUA ACAAGCAAC ACCAGU GAUUAGU                                                  G
G     -AG      C         U      A       CUUGCAGGCGGUACCCAGUUUAUAUGUUAUGACGUACAUAUAUAUGUUGU

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

ptc-miR827      UUAGAUGACCAUCAACGAAAA
mdm-miR827      UUAGAUGACCAUCAACGAACA
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