TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



mac-miR395b
Musa acuminata

Species
AGAGTTGGATTACCTCTGGAGTCCCTCAAACAATTCAGTAGGGCTCTTTGAGCTTAAACTTGAGAGCTGGTTCTCACTGAAGTGTTTGGGGGAACTCTGGATGTCATCCAACACCTC

PmiREN
--AGA       U  C        -          A      -      CUUUG     AAA 
     GUUGGAU AC UCUGGAGU CCCUCAAACA UUCAGU AGGGCU     AGCUU   C
     ||||||| || |||||||| |||||||||| |||||| ||||||     |||||    
     CAACCUA UG AGGUCUCA GGGGGUUUGU AAGUCA UCUUGG     UCGAG   G
CUCCA       C  U        A          G      C      -----     AGU 

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

sly-miR395a                  CUGAAGUGUUUGGGGGAACUCC-
sly-miR395b                  CUGAAGUGUUUGGGGGAACUCC-
dca-miR395-b2.0r1-24119      CUGAAGUGUUUGGGGGAACUC--
bra-miR395a                  CUGAAGUGUUUGGGGGAACUC--
bra-miR395b                  CUGAAGUGUUUGGGGGAACUC--
bra-miR395c                  CUGAAGUGUUUGGGGGAACUC--
bra-miR395d                  CUGAAGUGUUUGGGGGAACUC--
bra-miR395e                  CUGAAGUGUUUGGGGGAACUC--
bra-miR395f                  CUGAAGUGUUUGGGGGAACUC--
cru-miR395c                  CUGAAGUGUUUGGGGGAACUC--
cru-miR395e                  CUGAAGUGUUUGGGGGAACUC--
cru-miR395h                  CUGAAGUGUUUGGGGGAACUC--
cru-miR395j                  CUGAAGUGUUUGGGGGAACUC--
esa-miR395d                  CUGAAGUGUUUGGGGGAACUC--
esa-miR395e                  CUGAAGUGUUUGGGGGAACUC--
esa-miR395f                  CUGAAGUGUUUGGGGGAACUC--
esa-miR395g                  CUGAAGUGUUUGGGGGAACUC--
ath-miR395a                  CUGAAGUGUUUGGGGGAACUC--
ath-miR395d                  CUGAAGUGUUUGGGGGAACUC--
ath-miR395e                  CUGAAGUGUUUGGGGGAACUC--
ptc-miR395b                  CUGAAGUGUUUGGGGGAACUC--
ptc-miR395c                  CUGAAGUGUUUGGGGGAACUC--
ptc-miR395d                  CUGAAGUGUUUGGGGGAACUC--
ptc-miR395e                  CUGAAGUGUUUGGGGGAACUC--
ptc-miR395f                  CUGAAGUGUUUGGGGGAACUC--
ptc-miR395h                  CUGAAGUGUUUGGGGGAACUC--
ptc-miR395i                  CUGAAGUGUUUGGGGGAACUC--
ptc-miR395j                  CUGAAGUGUUUGGGGGAACUC--
vvi-miR395a                  CUGAAGUGUUUGGGGGAACUC--
ppe-miR395l                  CUGAAGUGUUUGGGGGAACUC--
csi-miR395c-3p               CUGAAGUGUUUGGGGGAACUC--
csi-miR395b-3p               CUGAAGUGUUUGGGGGAACUC--
atr-miR395                   CUGAAGUGUUUGGGGGAACUC--
ppe-miR395n                  CUGAAGUGUUUGGGGGAACUC--
ppe-miR395m                  CUGAAGUGUUUGGGGGAACUC--
ppe-miR395k                  CUGAAGUGUUUGGGGGAACUC--
ppe-miR395j                  CUGAAGUGUUUGGGGGAACUC--
ppe-miR395i                  CUGAAGUGUUUGGGGGAACUC--
ppe-miR395h                  CUGAAGUGUUUGGGGGAACUC--
ppe-miR395g                  CUGAAGUGUUUGGGGGAACUC--
ppe-miR395f                  CUGAAGUGUUUGGGGGAACUC--
ppe-miR395e                  CUGAAGUGUUUGGGGGAACUC--
ppe-miR395d                  CUGAAGUGUUUGGGGGAACUC--
ppe-miR395c                  CUGAAGUGUUUGGGGGAACUC--
stu-miR395j                  CUGAAGUGUUUGGGGGAACUC--
stu-miR395i                  CUGAAGUGUUUGGGGGAACUC--
stu-miR395h                  CUGAAGUGUUUGGGGGAACUC--
stu-miR395g                  CUGAAGUGUUUGGGGGAACUC--
stu-miR395f                  CUGAAGUGUUUGGGGGAACUC--
stu-miR395e                  CUGAAGUGUUUGGGGGAACUC--
stu-miR395d                  CUGAAGUGUUUGGGGGAACUC--
stu-miR395c                  CUGAAGUGUUUGGGGGAACUC--
stu-miR395b                  CUGAAGUGUUUGGGGGAACUC--
stu-miR395a                  CUGAAGUGUUUGGGGGAACUC--
mes-miR395d                  CUGAAGUGUUUGGGGGAACUC--
mes-miR395c                  CUGAAGUGUUUGGGGGAACUC--
mes-miR395b                  CUGAAGUGUUUGGGGGAACUC--
mes-miR395a                  CUGAAGUGUUUGGGGGAACUC--
mdm-miR395i-3p               CUGAAGUGUUUGGGGGAACUC--
mdm-miR395h                  CUGAAGUGUUUGGGGGAACUC--
mdm-miR395g-3p               CUGAAGUGUUUGGGGGAACUC--
mdm-miR395f                  CUGAAGUGUUUGGGGGAACUC--
mdm-miR395e                  CUGAAGUGUUUGGGGGAACUC--
mdm-miR395d-3p               CUGAAGUGUUUGGGGGAACUC--
mdm-miR395c                  CUGAAGUGUUUGGGGGAACUC--
mdm-miR395b                  CUGAAGUGUUUGGGGGAACUC--
mdm-miR395a                  CUGAAGUGUUUGGGGGAACUC--
ptc-miR395k                  CUGAAGUGUUUGGGGGAACUC--
lus-miR395d                  CUGAAGUGUUUGGGGGAACUC--
lus-miR395c                  CUGAAGUGUUUGGGGGAACUC--
lus-miR395b                  CUGAAGUGUUUGGGGGAACUC--
lus-miR395a                  CUGAAGUGUUUGGGGGAACUC--
gma-miR395c                  CUGAAGUGUUUGGGGGAACUC--
gma-miR395b                  CUGAAGUGUUUGGGGGAACUC--
gma-miR395a                  CUGAAGUGUUUGGGGGAACUC--
tcc-miR395b                  CUGAAGUGUUUGGGGGAACUC--
tcc-miR395a                  CUGAAGUGUUUGGGGGAACUC--
csi-miR395a                  CUGAAGUGUUUGGGGGAACUC--
aly-miR395g-3p               CUGAAGUGUUUGGGGGAACUC--
aly-miR395e-3p               CUGAAGUGUUUGGGGGAACUC--
aly-miR395d-3p               CUGAAGUGUUUGGGGGAACUC--
rco-miR395e                  CUGAAGUGUUUGGGGGAACUC--
rco-miR395d                  CUGAAGUGUUUGGGGGAACUC--
rco-miR395c                  CUGAAGUGUUUGGGGGAACUC--
rco-miR395b                  CUGAAGUGUUUGGGGGAACUC--
rco-miR395a                  CUGAAGUGUUUGGGGGAACUC--
vvi-miR395m                  CUGAAGUGUUUGGGGGAACUC--
vvi-miR395l                  CUGAAGUGUUUGGGGGAACUC--
vvi-miR395k                  CUGAAGUGUUUGGGGGAACUC--
vvi-miR395j                  CUGAAGUGUUUGGGGGAACUC--
vvi-miR395i                  CUGAAGUGUUUGGGGGAACUC--
vvi-miR395h                  CUGAAGUGUUUGGGGGAACUC--
vvi-miR395g                  CUGAAGUGUUUGGGGGAACUC--
vvi-miR395f                  CUGAAGUGUUUGGGGGAACUC--
vvi-miR395e                  CUGAAGUGUUUGGGGGAACUC--
vvi-miR395d                  CUGAAGUGUUUGGGGGAACUC--
vvi-miR395c                  CUGAAGUGUUUGGGGGAACUC--
vvi-miR395b                  CUGAAGUGUUUGGGGGAACUC--
ptc-miR395g                  CUGAAGUGUUUGGGGGAACUC--
bdi-miR395q                  -UGAAGUGUUUGGGGGAACUC--
cpa-miR395e                  -UGAAGUGUUUGGGGGAACUC--
cpa-miR395d                  -UGAAGUGUUUGGGGGAACUC--
cpa-miR395c                  -UGAAGUGUUUGGGGGAACUC--
cpa-miR395b                  -UGAAGUGUUUGGGGGAACUC--
cpa-miR395a                  -UGAAGUGUUUGGGGGAACUC--
bdi-miR395o-3p               -UGAAGUGUUUGGGGGAACUC--
bdi-miR395n-3p               -UGAAGUGUUUGGGGGAACUC--
bdi-miR395l-3p               -UGAAGUGUUUGGGGGAACUC--
bdi-miR395k-3p               -UGAAGUGUUUGGGGGAACUC--
bdi-miR395j-3p               -UGAAGUGUUUGGGGGAACUC--
bdi-miR395h-3p               -UGAAGUGUUUGGGGGAACUC--
bdi-miR395g-3p               -UGAAGUGUUUGGGGGAACUC--
bdi-miR395f-3p               -UGAAGUGUUUGGGGGAACUC--
bdi-miR395e-3p               -UGAAGUGUUUGGGGGAACUC--
bdi-miR395m                  -UGAAGUGUUUGGGGGAACUC--
bdi-miR395c-3p               -UGAAGUGUUUGGGGGAACUC--
bdi-miR395b                  -UGAAGUGUUUGGGGGAACUC--
bdi-miR395a                  -UGAAGUGUUUGGGGGAACUC--
tae-miR395b                  -UGAAGUGUUUGGGGGAACUC--
sit-miR395i                  -UGAAGUGUUUGGGGGAACUC--
sit-miR395h                  -UGAAGUGUUUGGGGGAACUC--
sit-miR395g                  -UGAAGUGUUUGGGGGAACUC--
sit-miR395f                  -UGAAGUGUUUGGGGGAACUC--
sit-miR395e                  -UGAAGUGUUUGGGGGAACUC--
sit-miR395d                  -UGAAGUGUUUGGGGGAACUC--
sit-miR395c                  -UGAAGUGUUUGGGGGAACUC--
sit-miR395b                  -UGAAGUGUUUGGGGGAACUC--
sit-miR395a                  -UGAAGUGUUUGGGGGAACUC--
pvi-miR395f                  -UGAAGUGUUUGGGGGAACUC--
pvi-miR395e                  -UGAAGUGUUUGGGGGAACUC--
pvi-miR395c                  -UGAAGUGUUUGGGGGAACUC--
pvi-miR395b                  -UGAAGUGUUUGGGGGAACUC--
pha-miR395f                  -UGAAGUGUUUGGGGGAACUC--
pha-miR395e                  -UGAAGUGUUUGGGGGAACUC--
mtr-miR395g                  UUGAAGUGUUUGGGGGAACUC--
mtr-miR395k                  UUGAAGCGUUUGGGGGAACUC--
mac-miR395a                  -UGAAGUGUUUGGGGGAACUC--
mtr-miR395a                  AUGAAGUGUUUGGGGGAACUC--
mtr-miR395b                  AUGAAGUAUUUGGGGGAACUC--
sbi-miR395f                  AUGAAGUGUUUGGGGGAACUC--
mtr-miR395c                  AUGAAGUGUUUGGGGGAACUC--
mtr-miR395d                  AUGAAGUGUUUGGGGGAACUC--
mtr-miR395e                  AUGAAGUGUUUGGGGGAACUC--
mtr-miR395f                  AUGAAGUGUUUGGGGGAACUC--
mtr-miR395i                  AUGAAGUGUUUGGGGGAACUC--
mtr-miR395j                  AUGAAGUGUUUGGGGGAACUC--
mtr-miR395l                  AUGAAGUGUUUGGGGGAACUC--
mtr-miR395m                  AUGAAGUGUUUGGGGGAACUC--
mtr-miR395n                  AUGAAGUGUUUGGGGGAACUC--
mtr-miR395o                  AUGAAGUGUUUGGGGGAACUC--
gma-miR395i                  AUGAAGUGUUUGGGGGAACUC--
gma-miR395j                  AUGAAGUGUUUGGGGGAACUC--
gma-miR395k                  AUGAAGUGUUUGGGGGAACUC--
gma-miR395l                  AUGAAGUGUUUGGGGGAACUC--
gma-miR395m                  AUGAAGUGUUUGGGGGAACUC--
gma-miR395d                  -UGAAGUGUUUGGGGGAACUUU-
gma-miR395e                  -UGAAGUGUUUGGGGGAACUUU-
gma-miR395f                  -UGAAGUGUUUGGGGGAACUUU-
gma-miR395g                  -UGAAGUGUUUGGGGGAACUUU-
mtr-miR395h                  AUGAAGUGUUUGGGGGAACUU--
mac-miR395b                  -UGAAGUGUUUGGGGGAACUC--
mac-miR395c                  -UGAAGUGUUUGGGGGAACUC--
zma-miR395k-3p               GUGAAGUGUUUGAGGAAACUC--
mac-miR395d                  -UGAAGUGUUUGGGGGAACUC--
osa-miR395c                  GUGAAGUGUUUGGAGGAACUC--
zma-miR395c-3p               GUGAAGUGUUUGGAGGAACUC--
sbi-miR395k                  GUGAAGUGUUUGGAGGAACUC--
zma-miR395l-3p               GUGAAGUGUUUGGAGGAACUC--
zma-miR395m-3p               GUGAAGUGUUUGGAGGAACUC--
bdi-miR395p-3p               -UGAAGUGUUUGGAGGAACUC--
osa-miR395o                  AUGAAGUGUUUGGAGGAACUC--
aly-miR395i                  CUGAAGUGUUUGGAGGAACUC--
ptc-miR395a                  CUGAAGGGUUUGGAGGAACUC--
lus-miR395e                  CUGAAGUGUUUGGAGGAACUC--
pha-miR395a                  -UGAAGUGUUUGGGGGAACUC--
pha-miR395b                  -UGAAGUGUUUGGGGGAACUC--
pha-miR395c                  -UGAAGUGUUUGGGGGAACUC--
pha-miR395d                  -UGAAGUGUUUGGGGGAACUC--
mdm-miR395l                  CUGAAGUGUUUGGGGGAACCC--
ppe-miR395a-3p               CUGAAGUGUUUGGGGGGACCC--
ppe-miR395b-3p               CUGAAGUGUUUGGGGGGACCC--
bdi-miR395d-5p               UGGGGUUCCCUCCAAACACUUCA
                               *       *      **