TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



lus-miR171g
Linum usitatissimum

Species
UGAGUAAUGAUGAUCCUGAAGGUAUUGGCGCGGCUCAAUCGGAAGACAUGGCUAAUAAUAUUGAUACCAGAUGAUGGAUGACCGAAUGAGUAAAUAUUGAUAAGAUUGAUGAUGAUUAAUUAGCCAUGUGAUUUUGAUUGAGCCGCGUCAAUAUCCUCCUCUUCUACUCA

miRBase
      AU  U  UCCU  A                        -G        AAUAAUAUUGAUACCAGAUGAUGGAUGACCGAA 
UGAGUA  GA GA    GA GGUAUUGGCGCGGCUCAAUCGGAA  ACAUGGCU                                 U
||||||  || ||    || ||||||||||||||||||||||||  ||||||||                                  
ACUCAU  CU CU    CU CUAUAACUGCGCCGAGUUAGUUUU  UGUACCGA                                 G
      --  U  ---C  C                        AG        UUAAUUAGUAGUAGUUAGAAUAGUUAUAAAUGA 

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

mtr-miR171b         UGAUUGAGCCGCGUCAAUAUC
vvi-miR171b         UGAUUGAGCCGCGUCAAUAUC
lus-miR171g         UGAUUGAGCCGCGUCAAUAUC
lus-miR171j         UGAUUGAGCCGCGUCAAUAUC
ptc-miR171c         AGAUUGAGCCGCGCCAAUAUC
ptc-miR171d         AGAUUGAGCCGCGCCAAUAUC
mtr-miR171e-3p      AGAUUGAGCCGCGCCAAUAUC
rco-miR171g         AGAUUGAGCCGCGCCAAUAUC
tcc-miR171b         AGAUUGAGCCGCGCCAAUAUC
tcc-miR171c         AGAUUGAGCCGCGCCAAUAUC
lus-miR171a         AGAUUGAGCCGCGCCAAUAUC
lus-miR171f         AGAUUGAGCCGCGCCAAUAUC
mes-miR171f         AGAUUGAGCCGCGCCAAUAUC
ptc-miR171k         GGAUUGAGCCGCGCCAAUAUC
esa-miR171b         UGAUUGAGCCGCGCCAAUAUC
zma-miR171a-3p      UGAUUGAGCCGCGCCAAUAU-
esa-miR171c         UGAUUGAGCCGCGCCAAUAUC
mac-miR171c         UGAUUGAGCCGCGCCAAUAUC
mac-miR171f         UGAUUGAGCCGCGCCAAUAUC
ath-miR171a-3p      UGAUUGAGCCGCGCCAAUAUC
mac-miR171g         UGAUUGAGCCGCGCCAAUAUC
vvi-miR171h         UGGUUGAGCCGCGCCAAUAUC
osa-miR171a         UGAUUGAGCCGCGCCAAUAUC
vvi-miR171e         UGAUUGAGCCGCGCCAAUAUC
sbi-miR171g         UGAUUGAGCCGCGCCAAUAUC
sbi-miR171j         UGAUUGAGCCGCGCCAAUAUC
bdi-miR171a         UGAUUGAGCCGCGCCAAUAUC
zma-miR171n-3p      UGAUUGAGCCGCGCCAAUAUC
ccl-miR171          UGAUUGAGCCGCGCCAAUAUC
aly-miR171a-3p      UGAUUGAGCCGCGCCAAUAUC
tcc-miR171a         UGAUUGAGCCGCGCCAAUAUC
mdm-miR171c         UGAUUGAGCCGCGCCAAUAUC
mdm-miR171d         UGAUUGAGCCGCGCCAAUAUC
mdm-miR171e         UGAUUGAGCCGCGCCAAUAUC
atr-miR171a         UGAUUGAGCCGCGCCAAUAUC
atr-miR171c         UGAUUGAGCCGCGCCAAUAUC
pvi-miR171f         UGAUUGAGCCGUGCCAAUAUC
mtr-miR171c         UGAUUGAGCCGUGCCAAUAUU
pvi-miR171i         UGAUUGAGCCGUGCCAAUAUC
sit-miR171b         UGAUUGAGCCGUGCCAAUAUC
sit-miR171e         UGAUUGAGCCGUGCCAAUAUC
spo-miR171c         UGAUUGAGCCGUGCCAAUAUC
zos-miR171c         UGAUUGAGCCGUGCCAAUAUC
tae-miR171a         UGAUUGAGCCGUGCCAAUAUC
osa-miR171c-3p      UGAUUGAGCCGUGCCAAUAUC
osa-miR171f-3p      UGAUUGAGCCGUGCCAAUAUC
sbi-miR171a         UGAUUGAGCCGUGCCAAUAUC
zma-miR171e-3p      UGAUUGAGCCGUGCCAAUAUC
ptc-miR171f         UGAUUGAGCCGUGCCAAUAUC
ptc-miR171i         UGAUUGAGCCGUGCCAAUAUC
vvi-miR171c         UGAUUGAGCCGUGCCAAUAUC
sly-miR171a         UGAUUGAGCCGUGCCAAUAUC
bdi-miR171c-3p      UGAUUGAGCCGUGCCAAUAUC
rco-miR171e         UGAUUGAGCCGUGCCAAUAUC
tcc-miR171f         UGAUUGAGCCGUGCCAAUAUC
tcc-miR171g         UGAUUGAGCCGUGCCAAUAUC
bdi-miR171b         UGAUUGAGCCGUGCCAAUAUC
bdi-miR171d-3p      UGAUUGAGCCGUGCCAAUAUC
lus-miR171e         UGAUUGAGCCGUGCCAAUAUC
ppe-miR171f         UGAUUGAGCCGUGCCAAUAUC
mdm-miR171h         UGAUUGAGCCGUGCCAAUAUC
mes-miR171g         UGAUUGAGCCGUGCCAAUAUC
stu-miR171a-3p      UGAUUGAGCCGUGCCAAUAUC
stu-miR171e         UGAUUGAGCCGUGCCAAUAUC
bdi-miR171e         UGAUUGAGCCGUGCCAAUAUC
vvi-miR171j         UGAUUGAGCCGUGCCAAUAUC
fve-miR171c-3p      UGAUUGAGCCGUGCCAAUAUC
csi-miR171c-3p      UGAUUGAGCCGUGCCAAUAUC
pvi-miR171d         UGAUUGAGCCGUGCCAAUAUC
zma-miR171c-3p      UGACUGAGCCGUGCCAAUAUC
pvi-miR171g         UGAUUGAGCCGUGCCAAUAUC
pvi-miR171j         UGAUUGAGCCGUGCCAAUAUC
sit-miR171c         UGAUUGAGCCGUGCCAAUAUC
spo-miR171a         UGAUUGAGCCGUGCCAAUAUC
zos-miR171a         UGAUUGAGCCGUGCCAAUAUC
zos-miR171d         UGAUUGAGCCGUGCCAAUAUC
hvu-miR171-3p       UGAUUGAGCCGUGCCAAUAUC
osa-miR171d-3p      UGAUUGAGCCGUGCCAAUAUC
sbi-miR171b         UGAUUGAGCCGUGCCAAUAUC
zma-miR171d-3p      UGAUUGAGCCGUGCCAAUAUC
zma-miR171i-3p      UGAUUGAGCCGUGCCAAUAUC
ptc-miR171g-3p      UGAUUGAGCCGUGCCAAUAUC
mtr-miR171d         UGAUUGAGCCGUGCCAAUAUC
vvi-miR171d         UGAUUGAGCCGUGCCAAUAUC
sbi-miR171i         UGAUUGAGCCGUGCCAAUAUC
rco-miR171c         UGAUUGAGCCGUGCCAAUAUC
rco-miR171f         UGAUUGAGCCGUGCCAAUAUC
tcc-miR171h         UGAUUGAGCCGUGCCAAUAUC
gma-miR171e         UGAUUGAGCCGUGCCAAUAUC
gma-miR171j-3p      UGAUUGAGCCGUGCCAAUAUC
gma-miR171u         UGAUUGAGCCGUGCCAAUAUC
ppe-miR171a         UGAUUGAGCCGUGCCAAUAUC
ppe-miR171g         UGAUUGAGCCGUGCCAAUAUC
mes-miR171h         UGAUUGAGCCGUGCCAAUAUC
mes-miR171i         UGAUUGAGCCGUGCCAAUAUC
cpa-miR171a         UGAUUGAGCCGUGCCAAUAUC
cpa-miR171b         UGAUUGAGCCGUGCCAAUAUC
fve-miR171a         UGAUUGAGCCGUGCCAAUAUC
fve-miR171d         UGAUUGAGCCGUGCCAAUAUC
csi-miR171d-3p      UGAUUGAGCCGUGCCAAUAUC
csi-miR171f-3p      UGAUUGAGCCGUGCCAAUAUC
csi-miR171h-3p      UGAUUGAGCCGUGCCAAUAUC
csi-miR171i-3p      UGAUUGAGCCGUGCCAAUAUC
fve-miR171e         UGAUUGAGCCGUGCCAAUAUC
fve-miR171g         UGAUUGAGCCGUGCCAAUAUC
cpa-miR171c         UGAUUGAGCCGUGCCAAUAUC
cpa-miR171d         UGAUUGAGCCGUGCCAAUAUC
mes-miR171j         UGAUUGAGCCGUGCCAAUAUC
mes-miR171k         UGAUUGAGCCGUGCCAAUAUC
ppe-miR171c         UGAUUGAGCCGUGCCAAUAUC
mdm-miR171g         UGAUUGAGCCGUGCCAAUAUC
lus-miR171b         UGAUUGAGCCGUGCCAAUAUC
lus-miR171c         UGAUUGAGCCGUGCCAAUAUC
gma-miR171f         UGAUUGAGCCGUGCCAAUAUC
gma-miR171g         UGAUUGAGCCGUGCCAAUAUC
tcc-miR171d         UGAUUGAGCCGUGCCAAUAUC
tcc-miR171e         UGAUUGAGCCGUGCCAAUAUC
rco-miR171d         UGAUUGAGCCGUGCCAAUAUC
sbi-miR171k         UGAUUGAGCCGUGCCAAUAUC
vvi-miR171i         UGAUUGAGCCGUGCCAAUAUC
vvi-miR171a         UGAUUGAGCCGUGCCAAUAUC
ptc-miR171h-3p      UGAUUGAGCCGUGCCAAUAUC
ptc-miR171e         UGAUUGAGCCGUGCCAAUAUC
zma-miR171j-3p      UGAUUGAGCCGUGCCAAUAUC
sbi-miR171d         UGAUUGAGCCGUGCCAAUAUC
osa-miR171e-3p      UGAUUGAGCCGUGCCAAUAUC
osa-miR171b         UGAUUGAGCCGUGCCAAUAUC
zos-miR171e         UGAUUGAGCCGUGCCAAUAUC
zos-miR171b         UGAUUGAGCCGUGCCAAUAUC
spo-miR171b         UGAUUGAGCCGUGCCAAUAUC
sit-miR171d         UGAUUGAGCCGUGCCAAUAUC
sit-miR171a         UGAUUGAGCCGUGCCAAUAUC
pvi-miR171h         UGAUUGAGCCGUGCCAAUAUC
pvi-miR171e         UGAUUGAGCCGUGCCAAUAUC
pvi-miR171c         UGAUUGAGCCGUGCCAAUAUC
pvi-miR171b         UGAUUGAGCCGUGCCAAUAUC
pvi-miR171a         UGAUUGAGCCGUGCCAAUAUC
pha-miR171e         UGAUUGAGCCGUGCCAAUAUC
pha-miR171d         UGAUUGAGCCGUGCCAAUAUC
pha-miR171c         UGAUUGAGCCGUGCCAAUAUC
pha-miR171b         UGAUUGAGCCGUGCCAAUAUC
pha-miR171a         UGAUUGAGCCGUGCCAAUAUC
mac-miR171j         UGAUUGAGCCGUGCCAAUAUC
mac-miR171h         UGAUUGAGCCGUGCCAAUAUC
mac-miR171e         UGAUUGAGCCGUGCCAAUAUC
mac-miR171d         UGAUUGAGCCGUGCCAAUAUC
mac-miR171b         UGAUUGAGCCGUGCCAAUAUC
mac-miR171a         UGAUUGAGCCGUGCCAAUAUC
esa-miR171a         UGAUUGAGCCGUGCCAAUAUC
mac-miR171i         CGAUUGAGCCGUGCCAAUAUC
ath-miR170-3p       UGAUUGAGCCGUGUCAAUAUC
aly-miR170-3p       UGAUUGAGCCGUGUCAAUAUC
stu-miR171c-3p      UGAUUGAGCCGUGUCAAUAUC
mtr-miR171a         UGAUUGAGUCGUGCCAAUAUC
gma-miR171d         UGAUUGAGUCGUGUCAAUAUC
osa-miR171i-3p      GGAUUGAGCCGCGUCAAUAUC
sbi-miR171h         GGAUUGAGCCGCGUCAAUAUC
zma-miR171l-3p      GGAUUGAGCCGCGUCAAUAUC
zma-miR171m-3p      GGAUUGAGCCGCGUCAAUAUC
zma-miR171b-5p      -GAUAUUGGCGCGGUUCAAUC
zma-miR171f-5p      CGAUGUUGGCAUGGCUCAAUC
ptc-miR171a-5p      GGAUAUUGGUACGGUUCAAUC
                     *     *    *     **