TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

gma-miR5225

Organism

Glycine max

Species

Mature miRNA Sequence(5'-3')

CCUGUCGUAGGAGAGAUGACGC

miRBase

Precursor miRNA Sequence(5'-3')

UUUAGGGACUCCUGUCGUAGGAGAGAUGACGCCUUCUGUUAGGUAAUUAAUAUGUUGCAAAGCCAACUUGAAUUAGCAGUAGCUGUCAUCUUUCCUCGGCUGAAGCCCCUUCA

miRBase

Precursor miRNA Structure(5'-3') 

UUU    A  C U    U             C  U       --------------     UA 
   AGGG CU C GUCG AGGAGAGAUGACG CU CUGUUAG              GUAAU  A
   |||| || | |||| ||||||||||||| || |||||||              |||||   
   UCCC GA G CGGC UCCUUUCUACUGU GA GACGAUU              CGUUG  U
ACU    C  A U    -             C  U       AAGUUCAACCGAAA     UA

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

ppe-miR5225-5p      UCUGUCGUAGGAGAGAUGGCGC-
fve-miR5225         -CUGUCGUAGGAGAGAUGGCGCC
gma-miR5225         CCUGUCGUAGGAGAGAUGACGC-
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