TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

gma-miR5036

Organism

Glycine max

Species

Mature miRNA Sequence(5'-3')

AGAGGCCCUUGGGGAGGAGUAA

miRBase

Precursor miRNA Sequence(5'-3')

AGGGGUUGAUUGUUCACUCUCCCUCAAGGGCUUCUCGCUUUAACAUCCAAGAACAAGACUAGAGGCCCUUGGGGAGGAGUAAAUAAGCUGUUCCUUAUAUAUAUAUAUAUAUAUAACACAAAGAAGUUCAUCUUGUUUCUCACCUUCAUAA

miRBase

Precursor miRNA Structure(5'-3') 

--------------------------------------------------------AGGGGUUGA     C     C              C -   UAA AU 
                                                                 UUGUU ACUCU CCUCAAGGGCUUCU G CUU   C  C
                                                                 ||||| ||||| |||||||||||||| | |||   |   
                                                                 AAUAA UGAGG GGGGUUCCCGGAGA C GAA   G  A
AAUACUUCCACUCUUUGUUCUACUUGAAGAAACACAAUAUAUAUAUAUAUAUAUAUUCCUUGUCG     A     A              U A   CAA AA

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

gma-miR5036        AGAGGCCCUUGGGGAGGAGUAA
ppe-miR477-3p      CGAAGCCUUUGGGGAG-AGUAA
                    ** *** ******** *****