TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

gma-miR4406

Organism

Glycine max

Species

Mature miRNA Sequence(5'-3')

AUUGAUUCUGAGAGAACCGGUGUA

miRBase

Precursor miRNA Sequence(5'-3')

CAAUCUAUAUUGAUUCUGAGAGAACCGGUGUAGAAUGAUAAUCAUUCUAAGACGGCCUUCGACAUGUGACCGUUUUAGAAUCGUUAGCAUUCUACAUCGGUCGUCUCAGAACCGAUGUAGAAUG

miRBase

Precursor miRNA Structure(5'-3') 

CAA         A        GA              A    C            - - UUC 
   UCUAUAUUG UUCUGAGA  ACCGGUGUAGAAUG UAAU AUUCUAAGACGG C C   G
   ||||||||| ||||||||  |||||||||||||| |||| |||||||||||| | |    
   AGAUGUAGC AAGACUCU  UGGCUACAUCUUAC AUUG UAAGAUUUUGCC G G   A
GUA         C        GC              G    C            A U UAC

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

gma-miR4406      AUUGAUUCUGAGAGAACCGGUGUA
ptc-miR7830      --UGAUCU--AGAGAACCGUUGCU
                   ****    ********* **