TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

gma-miR4374b

Organism

Glycine max

Species

Mature miRNA Sequence(5'-3')

UACUUUCAAAGACGUUGUUGAG

miRBase

Precursor miRNA Sequence(5'-3')

GGUGCUUACCUCAGCAACGUCUUUAAAAGUAGGCAUUCUAAGACGUUGCUGAAGUAAGCACCGUCUUUGAAUGCCUACUUUCAAAGACGUUGUUGAGGUAAGCACC

miRBase

Precursor miRNA Structure(5'-3') 

                        A             U      U    GA 
GGUGCUUACCUCAGCAACGUCUUU AAAGUAGGCAUUC AAGACG UGCU  A
|||||||||||||||||||||||| ||||||||||||| |||||| ||||   
CCACGAAUGGAGUUGUUGCAGAAA UUUCAUCCGUAAG UUCUGC ACGA  A
                        C             U      C    AU

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

gma-miR4374b             -UACUUUCAAAGACGUUGUUGAG
mpo-miR-b3.0r1-4483      UUCUGGUCAAAGA-GUUGUUGA-
                          *    ******* ********