TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

gma-miR4357

Organism

Glycine max

Species

Mature miRNA Sequence(5'-3')

CAGUCGUGUGAUUGUACGGUUCAU

miRBase

Precursor miRNA Sequence(5'-3')

AUUAACUGUACAAAACACAUGACUCCUCAAUUAUUCUCAAAAUAAUUUUAAGUCAUCGCACCUCAAAGUGAUUGAACUCGUCGGGUUUCCACGGUGGAUCCCAUCACAAUACUCGUCGCACACUAAUUCGUCGUCCUUAAAGGGUUUUACAGUCGUGUGAUUGUACGGUUCAUAG

miRBase

Precursor miRNA Structure(5'-3') 

--AUU          AA         CCUCAAUUAUUCUCAAAAUAAUUUUAAGUCAUCGCACCUCAAAGUGAUUGAACUCGUCGGGU 
     AACUGUACAA  CACAUGACU                                                              U
     ||||||||||  |||||||||                                                               
     UUGGCAUGUU  GUGUGCUGA                                                              C
GAUAC          -A         CAUUUUGGGAAAUUCCUGCUGCUUAAUCACACGCUGCUCAUAACACUACCCUAGGUGGCACC

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

gma-miR4357       --CAGUCGUGUGAUUGUACGGUUCAU
esa-miRN1020      UGUAAACGGACAAUC--ACGACU---
                     *  **    **   ***  *