TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

gma-miR391-5p

Organism

Glycine max

Species

Mature miRNA Sequence(5'-3')

UACGCAGGAGAGAUGACGCUGU

miRBase

Precursor miRNA Sequence(5'-3')

AAGGUUUGCUACGCAGGAGAGAUGACGCUGUCCCUUGCACCCAUCCUAGCUUCCCUUGAGUAGGUAAGAGCAAGGCCAGCCAGCAUCAUAUCUCCUGCAUAGUAAACCUU

miRBase

Precursor miRNA Structure(5'-3') 

           C        G    C    U ---      ACCCAU    G   C 
AAGGUUUGCUA GCAGGAGA AUGA GCUG C   CCUUGC      CCUA CUU C
||||||||||| |||||||| |||| |||| |   ||||||      |||| ||| C
UUCCAAAUGAU CGUCCUCU UACU CGAC G   GGAACG      GGAU GAG G
           A        A    A    C ACC      -AGAAU    -   U

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

stu-miR391-5p      UACGCAGGAGAGAUGAUGCUG--
sly-miR391         -ACGCAGGAGAGAUGAUGCUGGA
gma-miR391-5p      UACGCAGGAGAGAUGACGCUGU-
mdm-miR391         UACGCAGGAGAGAUGACGCCG--
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