TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

gma-miR1515b

Organism

Glycine max

Species

Mature miRNA Sequence(5'-3')

UCAUUUUGCGUGCAAUGAUCUG

miRBase

Precursor miRNA Sequence(5'-3')

UGUUCAUCAUUUUGCGUGCAAUGAUCUGAACCAUUUUCAUUCCCUGUACCGUUGUUUCGUUCUGGCAUAACCAAAUUAGGUCAUUGUUUUUUGGUUUGUGGAAAAUGUUUCUGAUCAUUCACGCAAAAUGAUGUCAAUUUU

miRBase

Precursor miRNA Structure(5'-3') 

-----  UU              C       U   C       AUUCCCUGUACCGUUGUUUCGUUCUGGCAU 
     UG  CAUCAUUUUGCGUG AAUGAUC GAA CAUUUUC                              A
     ||  |||||||||||||| ||||||| ||| |||||||                               
     AC  GUAGUAAAACGCAC UUACUAG CUU GUAAAAG                              C
UUUUA  -U              -       U   U       GUGUUUGGUUUUUUGUUACUGGAUUAAACC

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

gma-miR1515a         -UCAUUUU-GCGUGCAAUGAUCUG
gma-miR1515b         -UCAUUUU-GCGUGCAAUGAUCUG
csi-miR1515a         -UCAUUUUUGCGUGCAAUGAUCC-
csi-miR1515b-5p      -UCAUUUUUGCGUGCAAUGAUCC-
csi-miR1515b-3p      AUCAUUCACGCA-AAAAUGAUU--
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