TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

gma-miR1509b

Organism

Glycine max

Species

Mature miRNA Sequence(5'-3')

UUAAUCAAGGAAAUCACGGUU

miRBase

Precursor miRNA Sequence(5'-3')

CUGCAUCUUUUUAAUCAAGGAAAUCACGGUUGAGUGUGAAGGAGAGAAAGUGGCUUCAGAUUUCCGGGUUUUCCUUCUCCACUGUGUUUCCUUGGUUAAAGAUAUGUGC

miRBase

Precursor miRNA Structure(5'-3') 

CU    C                U      U  GUGU         AAAG   CUUC 
  GCAU UUUUUAAUCAAGGAAA CACGGU GA    GAAGGAGAG    UGG    A
  |||| |||||||||||||||| |||||| ||    |||||||||    |||     
  UGUA AGAAAUUGGUUCCUUU GUGUCA CU    CUUCCUUUU    GCC    U
CG    U                -      C  ----         --GG   UUUA

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

gma-miR1509a         --UUAAUCAAGGAAAUCACGGUCG
gma-miR1509b         --UUAAUCAAGGAAAUCACGGUU-
mtr-miR1509a-3p      ACCGGAUUUCCUUGAUUAAAG---
                          **       ** *  *