TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

gma-miR1507c-3p

Organism

Glycine max

Species

Mature miRNA Sequence(5'-3')

CCUCAUUCCAAACAUCAUCU

miRBase

Precursor miRNA Sequence(5'-3')

UGCUAGAGGUGUUUGGGAUGAGAGAAUAGAAUUUUUUCAAAUGCUUGAAAGUGAUCUCUUCCCUCAUUCCAAACAUCAUCUAACACACAU

miRBase

Precursor miRNA Structure(5'-3') 

-----  C    -               A   U   AUU       A 
     UG UAGA GGUGUUUGGGAUGAG GAA AGA   UUUUCAA U
     || |||| ||||||||||||||| ||| |||   |||||||  
     AC AUCU CUACAAACCUUACUC CUU UCU   GAAAGUU U
UACAC  A    A               C   C   AGU       C

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

mtr-miR1507-3p       CCUCGUUCCAUACAUCAUCUAG
gma-miR1507c-3p      CCUCAUUCCAAACAUCAUCU--
                     **** ***** *********