TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

esa-miR824

Organism

Eutrema salsugineum

Species

Mature miRNA Sequence(5'-3')

CCUUCUCAUCGAUGGUCUAGA

PmiREN

Precursor miRNA Sequence(5'-3')

GGGAGGTGTTGGGTAAATTCCCTTCTCATCGATGGTCTAGATTTGCGAGGTGACTCTCATGGAGGTAAAGAGAAATAGTGATTTTGAGAAGCATCCAACATAATGGTAATCTCT

PmiREN

Precursor miRNA Structure(5'-3') 

G    ---------         AAAUUCC       UC   G U   ----GA     -GAG      
 GGAG         GUGUUGGGU       CUUCUCA  GAU G CUA      UUUGC    GUGAC 
 ||||         |||||||||       |||||||  ||| | |||      |||||    |||| U
 UCUC         UACAACCUA       GAAGAGU  UUA U GAU      AAAUG    UACUC 
-    UAAUGGUAA         ------C       -U   G -   AAAGAG     GAGG

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

esa-miR824         CCUUCUCAUCGAUGGUCUAGA
aly-miR824-3p      CCUUCUCAUCGAUGGUCUAGA
ath-miR824-3p      CCUUCUCAUCGAUGGUCUAGA
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