TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

csi-miR166d-5p

Organism

Citrus sinensis

Species

Mature miRNA Sequence(5'-3')

CUGUUGUCUGGUUCAAGG

miRBase

Precursor miRNA Sequence(5'-3')

CUGUUCUUUUGAGGGGACUGUUGUCUGGUUCAAGGCCAUCAAUUAAUUGUAACUUUGAUUCAUGUGUGUGUGUCUGUGUGUAUAUACAUAUAUGUUCUCGGACCAGGCUUCAUUCCCCUUAAUUACUG

miRBase

Precursor miRNA Structure(5'-3') 

CUGUUCUU         C  UU         A   CCAUCAAUUAAUUGUAACUUUGAUUCAUG 
        UUGAGGGGA UG  GUCUGGUUC AGG                             U
        ||||||||| ||  ||||||||| |||                              
        AAUUCCCCU AC  CGGACCAGG UCU                             G
--GUCAUU         U  UU         C   UGUAUAUACAUAUAUGUGUGUCUGUGUGU

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

zma-miR166d-5p      GGAAUGUU-GUCUGGUUCAAGG
bdi-miR166c-5p      GGAAUGUU-GUCUGGUUCAAGG
zma-miR166b-5p      GGAAUGUU-GUCUGGUUCAAGG
osa-miR166e-5p      GGAAUGUU-GUCUGGUUCAAGG
osa-miR166a-5p      GGAAUGUU-GUCUGGUUCAAGG
csi-miR166d-5p      ---CUGUU-GUCUGGUUCAAGG
osa-miR166l-5p      GGAUUGUU-GUCUGGUUCAAGG
zma-miR166j-5p      GGUUUGUUUGUCUGGUUCAAGG
osa-miR166k-5p      GGUUUGUU-GUCUGGCUCGAGG
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