TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



csi-miR160c-5p
Citrus sinensis

Species
UGAUAUAUAGUAUGCCUGGCUCCCUGUAUGCUUUUUGCAAAGCCCAUCAGAAGAUUGGUGGUCUUGGCGGAUAGCGUGCGAGGAGCCAUGCAUGCUAAAUUUAG

miRBase
UGAUAUA        C       C        U     A   C      GA 
       UAGUAUGC UGGCUCC UGUAUGCU UUUGC AAG CCAUCA  A
       |||||||| ||||||| |||||||| ||||| ||| ||||||   
       AUCGUACG ACCGAGG GCGUGCGA AGGCG UUC GGUGGU  U
GAUUUAA        U       A        U     G   U      UA 

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

osa-miR160f-5p             UGCCUGGCUCCCUGAAUGCCA--
ptc-miR160e-5p             UGCCUGGCUCCCUGAAUGCCA--
ptc-miR160f                UGCCUGGCUCCCUGAAUGCCA--
mtr-miR160c                UGCCUGGCUCCCUGAAUGCCA--
sbi-miR160f                UGCCUGGCUCCCUGAAUGCCA--
rco-miR160c                UGCCUGGCUCCCUGAAUGCCA--
tcc-miR160a                UGCCUGGCUCCCUGAAUGCCA--
bdi-miR160e-5p             UGCCUGGCUCCCUGAAUGCCA--
mes-miR160f                UGCCUGGCUCCCUGAAUGCCA--
cpa-miR160d                UGCCUGGCUCCCUGAAUGCCA--
vvi-miR160a                UGCCUGGCUCCCUGAAUGCCAUC
vvi-miR160b                UGCCUGGCUCCCUGAAUGCCAUC
mes-miR160e                UGCCUGGCUCCCUGAAUGCCAUC
ptc-miR160g                UGCCUGGCUCCCUGGAUGCCA--
tcc-miR160c                UGCCUGGCUCCCUGGAUGCCA--
lus-miR160c                UGCCUGGCUCCCUGGAUGCCA--
lus-miR160g                UGCCUGGCUCCCUGGAUGCCA--
mac-miR160a                UGCCUGGCUCCCUGCAUGCCA--
zos-miR160a                UGCCUGGCUCCCUGCAUGCCA--
ptc-miR160h                UGCCUGGCUCCCUGCAUGCCA--
mac-miR160d                UGCCUGGCUCCCUGUAUGCCA--
mac-miR160c                UGCCUGGCUCCCUGUACGCCA--
mac-miR160g                UGCCUGGCUCCCUGUAUGCCA--
pha-miR160c                UGCCUGGCUCCCUGUAUGCCA--
pvi-miR160b                UGCCUGGCUCCCUGUAUGCCA--
pvi-miR160f                UGCCUGGCUCCCUGUAUGCCA--
pvi-miR160j                UGCCUGGCUCCCUGUAUGCCA--
sit-miR160d                UGCCUGGCUCCCUGUAUGCCA--
zos-miR160b                UGCCUGGCUCCCUGUAUGCCA--
ath-miR160b                UGCCUGGCUCCCUGUAUGCCA--
osa-miR160c-5p             UGCCUGGCUCCCUGUAUGCCA--
zma-miR160d-5p             UGCCUGGCUCCCUGUAUGCCA--
sbi-miR160a                UGCCUGGCUCCCUGUAUGCCA--
mtr-miR160a                UGCCUGGCUCCCUGUAUGCCA--
ptc-miR160c-5p             UGCCUGGCUCCCUGUAUGCCA--
mtr-miR160e                UGCCUGGCUCCCUGUAUGCCA--
smo-miR160a                UGCCUGGCUCCCUGUAUGCCA--
vvi-miR160e                UGCCUGGCUCCCUGUAUGCCA--
rco-miR160b                UGCCUGGCUCCCUGUAUGCCA--
tcc-miR160b                UGCCUGGCUCCCUGUAUGCCA--
bdi-miR160d-5p             UGCCUGGCUCCCUGUAUGCCA--
lus-miR160e                UGCCUGGCUCCCUGUAUGCCA--
lus-miR160j                UGCCUGGCUCCCUGUAUGCCA--
mdm-miR160c                UGCCUGGCUCCCUGUAUGCCA--
mes-miR160b                UGCCUGGCUCCCUGUAUGCCA--
ppe-miR160a                UGCCUGGCUCCCUGUAUGCCA--
cpa-miR160c-5p             UGCCUGGCUCCCUGUAUGCCA--
fve-miR160a                UGCCUGGCUCCCUGUAUGCCA--
mac-miR160b                UGCCUGGCUCCCUGUAUGCCA--
bra-miR160g                UGCCUGGCUCCCUGUAUACCA--
mac-miR160f                UGCCUGGCUCCCUGUAUGCCA--
pha-miR160b                UGCCUGGCUCCCUGUAUGCCA--
pvi-miR160a                UGCCUGGCUCCCUGUAUGCCA--
pvi-miR160e                UGCCUGGCUCCCUGUAUGCCA--
pvi-miR160i                UGCCUGGCUCCCUGUAUGCCA--
sit-miR160c                UGCCUGGCUCCCUGUAUGCCA--
spo-miR160b                UGCCUGGCUCCCUGUAUGCCA--
ath-miR160a-5p             UGCCUGGCUCCCUGUAUGCCA--
osa-miR160b-5p             UGCCUGGCUCCCUGUAUGCCA--
zma-miR160c-5p             UGCCUGGCUCCCUGUAUGCCA--
sbi-miR160d                UGCCUGGCUCCCUGUAUGCCA--
sbi-miR160e                UGCCUGGCUCCCUGUAUGCCA--
ptc-miR160b-5p             UGCCUGGCUCCCUGUAUGCCA--
mtr-miR160d                UGCCUGGCUCCCUGUAUGCCA--
ppt-miR160f                UGCCUGGCUCCCUGUAUGCCA--
vvi-miR160d                UGCCUGGCUCCCUGUAUGCCA--
rco-miR160a                UGCCUGGCUCCCUGUAUGCCA--
aly-miR160c-5p             UGCCUGGCUCCCUGUAUGCCA--
bdi-miR160c-5p             UGCCUGGCUCCCUGUAUGCCA--
lus-miR160d                UGCCUGGCUCCCUGUAUGCCA--
lus-miR160i                UGCCUGGCUCCCUGUAUGCCA--
mdm-miR160b                UGCCUGGCUCCCUGUAUGCCA--
mes-miR160a                UGCCUGGCUCCCUGUAUGCCA--
stu-miR160b                UGCCUGGCUCCCUGUAUGCCA--
cpa-miR160b                UGCCUGGCUCCCUGUAUGCCA--
fve-miR160b                UGCCUGGCUCCCUGUAUGCCA--
atr-miR160                 UGCCUGGCUCCCUGUAUGCCA--
osa-miR160e-5p             UGCCUGGCUCCCUGUAUGCCG--
zma-miR160f-5p             UGCCUGGCUCCCUGUAUGCCG--
mes-miR160c                UGCCUGGCUCCCUGUAUGCCG--
csi-miR160b-5p             UGCCUGGCUCCCUGUAUGCCG--
gma-miR160b                UGCCUGGCUCCCUGUAUGCC---
csi-miR160c-5p             UGCCUGGCUCCCUGUAUGCUU--
gma-miR160c                UGCCUGGCUCCCUGUAUGCC---
gma-miR160d                UGCCUGGCUCCCUGUAUGCC---
gma-miR160e                UGCCUGGCUCCCUGUAUGCC---
bdi-miR160f                UGCCUGGCUCCCUGUAUGCC---
mpo-miR160-b3.0r1-941      UGCCUGGCUCCCUGUAUGCCA--
bol-miR160b                UGCCUGGCUCCCUGUAUGCCA--
bol-miR160c                UGCCUGGCUCCCUGUAUGCCA--
bra-miR160a                UGCCUGGCUCCCUGUAUGCCA--
bra-miR160b                UGCCUGGCUCCCUGUAUGCCA--
bra-miR160c                UGCCUGGCUCCCUGUAUGCCA--
bra-miR160d                UGCCUGGCUCCCUGUAUGCCA--
bra-miR160e                UGCCUGGCUCCCUGUAUGCCA--
bra-miR160f                UGCCUGGCUCCCUGUAUGCCA--
cru-miR160a                UGCCUGGCUCCCUGUAUGCCA--
cru-miR160b                UGCCUGGCUCCCUGUAUGCCA--
cru-miR160c                UGCCUGGCUCCCUGUAUGCCA--
esa-miR160a                UGCCUGGCUCCCUGUAUGCCA--
esa-miR160b                UGCCUGGCUCCCUGUAUGCCA--
esa-miR160c                UGCCUGGCUCCCUGUAUGCCA--
mac-miR160e                UGCCUGGCUCCCUGUAUGCCA--
pha-miR160a                UGCCUGGCUCCCUGUAUGCCA--
pha-miR160e                UGCCUGGCUCCCUGUAUGCCA--
pvi-miR160d                UGCCUGGCUCCCUGUAUGCCA--
pvi-miR160h                UGCCUGGCUCCCUGUAUGCCA--
sit-miR160b                UGCCUGGCUCCCUGUAUGCCA--
spo-miR160a                UGCCUGGCUCCCUGUAUGCCA--
tae-miR160                 UGCCUGGCUCCCUGUAUGCCA--
osa-miR160a-5p             UGCCUGGCUCCCUGUAUGCCA--
zma-miR160a-5p             UGCCUGGCUCCCUGUAUGCCA--
zma-miR160e                UGCCUGGCUCCCUGUAUGCCA--
sbi-miR160b                UGCCUGGCUCCCUGUAUGCCA--
ptc-miR160a                UGCCUGGCUCCCUGUAUGCCA--
mtr-miR160b                UGCCUGGCUCCCUGUAUGCCA--
ppt-miR160e                UGCCUGGCUCCCUGUAUGCCA--
vvi-miR160c                UGCCUGGCUCCCUGUAUGCCA--
zma-miR160g-5p             UGCCUGGCUCCCUGUAUGCCA--
aly-miR160b-5p             UGCCUGGCUCCCUGUAUGCCA--
bdi-miR160b-5p             UGCCUGGCUCCCUGUAUGCCA--
lus-miR160b                UGCCUGGCUCCCUGUAUGCCA--
lus-miR160h                UGCCUGGCUCCCUGUAUGCCA--
mdm-miR160a                UGCCUGGCUCCCUGUAUGCCA--
mdm-miR160e                UGCCUGGCUCCCUGUAUGCCA--
stu-miR160a-5p             UGCCUGGCUCCCUGUAUGCCA--
cpa-miR160a                UGCCUGGCUCCCUGUAUGCCA--
cpa-miR160f-5p             UGCCUGGCUCCCUGUAUGCCA--
cpa-miR160e                UGCCUGGCUCCCUGUAUGCCA--
ppe-miR160b                UGCCUGGCUCCCUGUAUGCCA--
mes-miR160d                UGCCUGGCUCCCUGUAUGCCA--
mdm-miR160d                UGCCUGGCUCCCUGUAUGCCA--
gma-miR160f                UGCCUGGCUCCCUGUAUGCCA--
lus-miR160f                UGCCUGGCUCCCUGUAUGCCA--
lus-miR160a                UGCCUGGCUCCCUGUAUGCCA--
bdi-miR160a-5p             UGCCUGGCUCCCUGUAUGCCA--
aly-miR160a-5p             UGCCUGGCUCCCUGUAUGCCA--
sly-miR160a                UGCCUGGCUCCCUGUAUGCCA--
smo-miR160b                UGCCUGGCUCCCUGUAUGCCA--
ppt-miR160a                UGCCUGGCUCCCUGUAUGCCA--
ptc-miR160d                UGCCUGGCUCCCUGUAUGCCA--
gma-miR160a-5p             UGCCUGGCUCCCUGUAUGCCA--
sbi-miR160c                UGCCUGGCUCCCUGUAUGCCA--
zma-miR160b-5p             UGCCUGGCUCCCUGUAUGCCA--
osa-miR160d-5p             UGCCUGGCUCCCUGUAUGCCA--
ath-miR160c-5p             UGCCUGGCUCCCUGUAUGCCA--
zos-miR160c                UGCCUGGCUCCCUGUAUGCCA--
sit-miR160e                UGCCUGGCUCCCUGUAUGCCA--
sit-miR160a                UGCCUGGCUCCCUGUAUGCCA--
pvi-miR160g                UGCCUGGCUCCCUGUAUGCCA--
pvi-miR160c                UGCCUGGCUCCCUGUAUGCCA--
pha-miR160d                UGCCUGGCUCCCUGUAUGCCA--
mes-miR160g                UGCCUGGCUCCCUGUAUGCCAUC
bol-miR160a                -GCCUGGCUCCCUGUAUGCCAU-
csi-miR160a-5p             -GCCUGGCUCCCUGUAUGCCAU-
mes-miR160h                UGCCUGGCUCCCUGUAUGCCAUU
ppt-miR160g                UGCCUGGCUCCUUGUAUGCCA--
ppt-miR160h                CGCCUGGCUCCUUGUAUGCCA--
ppt-miR160b                CGCCUGGCUCCCUGUAUGCCA--
ppt-miR160i                CGCCUGGCUCCCUGUAUGCCA--
ppt-miR160c                CGCCUGGCUCCCUGCAUGCCA--
ppt-miR160d                CGCCUGGCUCCCUGCAUGCCG--
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