TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

csi-miR160b-3p

Organism

Citrus sinensis

Species

Mature miRNA Sequence(5'-3')

GCGUACGAGGAGCCAAGCAUA

miRBase

Precursor miRNA Sequence(5'-3')

GUUUCUAAAGAAGGUGAAAUUAAUGGGUUAUGCCUGGCUCCCUGUAUGCCGCAAGCAGACGACAAUCUGCCGGAGAUUGGCCGUUGCUGGUGGCGUACGAGGAGCCAAGCAUACUAUUCUUCCUUCCCUUUCUCUUUAUAUGC

miRBase

Precursor miRNA Structure(5'-3') 

GUUUC      ---   U   --AUU     GU     C       C          A     A  -A      G 
     UAAAGA   AGG GAA     AAUGG  UAUGC UGGCUCC UGUAUGCCGC AGCAG CG  CAAUCU C
     ||||||   ||| |||     |||||  ||||| ||||||| |||||||||| ||||| ||  |||||| C
     AUUUCU   UCC CUU     UUAUC  AUACG ACCGAGG GCAUGCGGUG UCGUU GC  GUUAGA A
CGUAU      CUU   -   CCUUC     --     A       A          G     -  CG      G

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

ath-miR160a-3p      GCGUAUGAGGAGCCAUGCAUA
ptc-miR160b-3p      GCGUAUGAGGAGCCAUGCAUA
ptc-miR160c-3p      GCGUAUGAGGAGCCAUGCAUA
csi-miR160a-3p      GCGUAUGAGGAGCCAUGCAUA
aly-miR160a-3p      GCGUAUGAGGAGCCAUGCAUA
cpa-miR160c-3p      GCGUAUGAGGAGCCAUGCAUA
cpa-miR160f-3p      GCGUAUGAGGAGCCAUGCAUA
stu-miR160a-3p      GCGUAUGAGGAGCCAAGCAUA
gma-miR160a-3p      GCGUAUGAGGAGCCAAGCAUA
csi-miR160b-3p      GCGUACGAGGAGCCAAGCAUA
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