TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

csi-miR156j-3p

Organism

Citrus sinensis

Species

Mature miRNA Sequence(5'-3')

AUCCAACGAAGCAGGAGCUGC

miRBase

Precursor miRNA Sequence(5'-3')

GUGAAAGGCUGACACUCAGCUGCUGACUCGUUGGUUCAAGAGCUCAUCAAUGGAAAAUGUAGAAUCAUGAUGUGUUUCUGAUCCAACGAAGCAGGAGCUGCGUUUAGUCAUG

miRBase

Precursor miRNA Structure(5'-3') 

GUGAAA      C  U     G   AC       U   A    U     A  GAAAA 
      GGCUGA AC CAGCU CUG  UCGUUGG UCA GAGC CAUCA UG     U
      |||||| || ||||| |||  ||||||| ||| |||| ||||| ||     G
      CUGAUU UG GUCGA GAC  AGCAACC AGU UUUG GUAGU AC     G
---GUA      -  C     G   GA       U   C    U     -  UAAGA

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

csi-miR156j-3p       AUCCAACGAAGCAGGAGCUGC
mdm-miR319c-3p       AUCCAACGAAGCAGGAGCUGA
mtr-miR4414a-3p      AUCCAACGAUGCGGGAGCUGC
gma-miR4414a-3p      -UCCAACGAUGCGGGAGCUGC
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