TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

cre-miR1168.2

Organism

Chlamydomonas reinhardtii

Species

Mature miRNA Sequence(5'-3')

AGCACGGAAGGCGAAGA

miRBase

Precursor miRNA Sequence(5'-3')

GCGGCUUGGUCUUUCCGCGGUGGCCUCCUCCUCAAUCUUGGCCUUGCGCGCUUCGGGCUUGGCCUGGUCUACACAGCAGGCAGGGUUGGGAAGCUCCCUUACCCUGCCUGCUGUGUGGACAAGGCCAAGUCCGAAGCACGGAAGGCGAAGAUUGAGGAGGAGCGUGCAGUGCGGGUCCAUGGGUCGUGCCUGC

miRBase

Precursor miRNA Structure(5'-3') 

------      --   U UUU     G  -  -               G     G  C                G                    -U      
      GCGGCU  UGG C   CCGCG UG GC CUCCUCCUCAAUCUU GCCUU CG GCUUCGGGCUUGGCCU GUCUACACAGCAGGCAGGGU  GGGAA 
      ||||||  ||| |   ||||| || || ||||||||||||||| ||||| || |||||||||||||||| ||||||||||||||||||||  |||| G
      UGCUGG  ACC G   GGCGU AC UG GAGGAGGAGUUAGAA CGGAA GC CGAAGCCUGAACCGGA CAGGUGUGUCGUCCGUCCCA  CCCUC 
CGUCCG      GU   U ---     G  G  C               G     G  A                A                    UU

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

vca-miR1168        UGCAGCACGGAUGACGAAGACA
cre-miR1168.2      ---AGCACGGAAGGCGAAGA--
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