TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

bra-miR400

Organism

Brassica rapa

Species

Mature miRNA Sequence(5'-3')

UAUGAGAGUAUUAUAAGUCAC

PmiREN

Precursor miRNA Sequence(5'-3')

GAAGTTGCTGAAGATTGTTTTATGAGAGTATTATAAGTCACTGCATTTGGTAATCAAGTGTTGCTTTCCCAAACGAAGTGACTTATAATGATCTCATGAATCGATTTTTGCAAAGTCTTA

PmiREN

Precursor miRNA Structure(5'-3') 

---  AG    U        U         G              G A     UAAUC      
   GA  UUGC GAAGAUUG UUUAUGAGA UAUUAUAAGUCACU C UUUGG     AAGUG 
   ||  |||| |||||||| ||||||||| |||||||||||||| | |||||     |||| U
   CU  AACG UUUUUAGC AAGUACUCU GUAAUAUUCAGUGA G AAACC     UUCGC 
AUU  GA    -        U         A              A C     ---CU

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

bra-miR400         UAUGAGAGUAUUAUAAGUCAC
aly-miR400-5p      UAUGAGAGUAUUAUAAGUCAC
ath-miR400         UAUGAGAGUAUUAUAAGUCAC
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