TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

bra-miR2111c

Organism

Brassica rapa

Species

Mature miRNA Sequence(5'-3')

AUCCUCGGGAUGCGGAUUACC

PmiREN

Precursor miRNA Sequence(5'-3')

GAGTATTGGTGAGGACCGGGTAATCGGCATCCTGAGGTTTAAAGTTTAATTGCATAGCTAGGCATATATATGTGTGAGTCAGCGTAACTTTTAATCCTCGGGATGCGGATTACCTTCTCCTTACTTACAATACG

PmiREN

Precursor miRNA Structure(5'-3') 

GA      ---       CC        G           U      U   AU   AUA   AG     U 
  GUAUUG   GUGAGGA  GGGUAAUC GCAUCCUGAGG UUAAAG UUA  UGC   GCU  GCAUA A
  ||||||   |||||||  |||||||| ||||||||||| |||||| |||  |||   |||  |||||  
  CAUAAC   CAUUCCU  UCCAUUAG CGUAGGGCUCC AAUUUU AAU  GCG   UGA  UGUGU U
-G      AUU       CU        G           U      C   --   -AC   -G     A

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

aly-miR2111a-3p      GUCCUCGGGAUGCGGAUUACC
aly-miR2111c-3p      GUCCUCGGGAUGCGGAUUACC
ath-miR2111a-3p      GUCCUCGGGAUGCGGAUUACC
bra-miR2111f         GACCUCAGGAUGCGGAUUACC
fve-miR2111b-3p      GCCCUUGGGAUGCGGAUUACC
bra-miR2111c         AUCCUCGGGAUGCGGAUUACC
aly-miR2111b-3p      AUCCUCGGGAUACAGAUUACC
bra-miR2111d         AUCCUCGGGACACAGAUUACC
ath-miR2111b-3p      AUCCUCGGGAUACAGUUUACC
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