TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

bra-miR167d

Organism

Brassica rapa

Species

Mature miRNA Sequence(5'-3')

UGAAGCUGCCAGCAUGAUCUA

miRBase

Precursor miRNA Sequence(5'-3')

GGCGCACCGGCAUCUGAUGAAGCUGCCAGCAUGAUCUAAUUAUCUUUCUUUCUCUGUUGACGAUGGAAAAGACAUGAGUGUUGAUUAGAUCAUGUUCGCAGUUUCACCCGUUGACUGUCUCGCC

miRBase

Precursor miRNA Structure(5'-3') 

    CAC   -  U U A         C               --U   ---     C        
GGCG   CGG CA C G UGAAGCUGC AGCAUGAUCUAAUUA   CUU   UCUUU UCUGUUG 
||||   ||| || | | ||||||||| |||||||||||||||   |||   ||||| |||||| A
CCGC   GUC GU G C ACUUUGACG UUGUACUAGAUUAGU   GAG   AGAAA AGGUAGA 
    UCU   A  U C C         C               UGU   UAC     -

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

mdm-miR167h         -UGAAGCUGCCAGCAUGAUCUUA
gma-miR167k         -UGAAGCUGCCAGCCUGAUCUUA
mdm-miR167i         -UGAAGCUGCCAGCAUGAUCUUA
mdm-miR167j         -UGAAGCUGCCAGCAUGAUCUUA
ppe-miR167d         -UGAAGCUGCCAGCAUGAUCUUA
ptc-miR167f-5p      -UGAAGCUGCCAGCAUGAUCUU-
ptc-miR167g-5p      -UGAAGCUGCCAGCAUGAUCUU-
gma-miR167e         -UGAAGCUGCCAGCAUGAUCUU-
gma-miR167f         -UGAAGCUGCCAGCAUGAUCUU-
csi-miR167b-5p      -UGAAGCUGCCAGCAUGAUCUU-
tcc-miR167c         -UGAAGCUGCCAGCAUGAUCUU-
lus-miR167b         -UGAAGCUGCCAGCAUGAUCUU-
mes-miR167g         -UGAAGCUGCCAGCAUGAUCUU-
mes-miR167h         -UGAAGCUGCCAGCAUGAUCUU-
cpa-miR167c         -UGAAGCUGCCAGCAUGAUCUU-
mac-miR167b         -UAAAGCUGCCAGCAUGAUCUGA
sly-miR167b-5p      -UAAAGCUGCCAGCAUGAUCUGG
mac-miR167i         -UCAAGCUGCCAGCAUGAUCUGA
osa-miR167e-5p      -UGAAGCUGCCAGCAUGAUCUG-
osa-miR167g         -UGAAGCUGCCAGCAUGAUCUG-
mac-miR167s         -UGAAGCUGCCAGCAUGAUCUGG
mac-miR167t         -UGAAGCUGCCAGCAUGAUCUGG
ath-miR167d         -UGAAGCUGCCAGCAUGAUCUGG
rco-miR167c         -UGAAGCUGCCAGCAUGAUCUGG
aly-miR167d-5p      -UGAAGCUGCCAGCAUGAUCUGG
pha-miR167a         -UGAAGCUGCCAGCAUGAUCUG-
zos-miR167b         -UGAAGCUGCCAGCAUGAUCUG-
tae-miR167c-5p      -UGAAGCUGCCAGCAUGAUCUGC
ptc-miR167h-5p      -UGAAGCUGCCAACAUGAUCUG-
pvi-miR167h         -UGAAGCUGCCAGCAUGAUCUG-
osa-miR167d-5p      -UGAAGCUGCCAGCAUGAUCUG-
osa-miR167f         -UGAAGCUGCCAGCAUGAUCUG-
osa-miR167h-5p      -UGAAGCUGCCAGCAUGAUCUG-
osa-miR167i-5p      -UGAAGCUGCCAGCAUGAUCUG-
osa-miR167j         -UGAAGCUGCCAGCAUGAUCUG-
zma-miR167e-5p      -UGAAGCUGCCAGCAUGAUCUG-
zma-miR167g-5p      -UGAAGCUGCCAGCAUGAUCUG-
mac-miR167c         -UGAAGCUGCCAGCAUGAUCUGA
mac-miR167d         -UGAAGCUGCCAGCAUGAUCUGA
mac-miR167e         -UGAAGCUGCCAGCAUGAUCUGA
mac-miR167f         -UGAAGCUGCCAGCAUGAUCUGA
mac-miR167g         -UGAAGCUGCCAGCAUGAUCUGA
mac-miR167h         -UGAAGCUGCCAGCAUGAUCUGA
mac-miR167j         -UGAAGCUGCCAGCAUGAUCUGA
pha-miR167e         -UGAAGCUGCCAGCAUGAUCUGA
pha-miR167f         -UGAAGCUGCCAGCAUGAUCUGA
pha-miR167g         -UGAAGCUGCCAGCAUGAUCUGA
pha-miR167h         -UGAAGCUGCCAGCAUGAUCUGA
pvi-miR167a         -UGAAGCUGCCAGCAUGAUCUGA
pvi-miR167c         -UGAAGCUGCCAGCAUGAUCUGA
pvi-miR167d         -UGAAGCUGCCAGCAUGAUCUGA
pvi-miR167e         -UGAAGCUGCCAGCAUGAUCUGA
pvi-miR167f         -UGAAGCUGCCAGCAUGAUCUGA
pvi-miR167g         -UGAAGCUGCCAGCAUGAUCUGA
pvi-miR167i         -UGAAGCUGCCAGCAUGAUCUGA
pvi-miR167j         -UGAAGCUGCCAGCAUGAUCUGA
pvi-miR167k         -UGAAGCUGCCAGCAUGAUCUGA
pvi-miR167l         -UGAAGCUGCCAGCAUGAUCUGA
pvi-miR167m         -UGAAGCUGCCAGCAUGAUCUGA
pvi-miR167n         -UGAAGCUGCCAGCAUGAUCUGA
sit-miR167a         -UGAAGCUGCCAGCAUGAUCUGA
sit-miR167b         -UGAAGCUGCCAGCAUGAUCUGA
sit-miR167c         -UGAAGCUGCCAGCAUGAUCUGA
sit-miR167d         -UGAAGCUGCCAGCAUGAUCUGA
sit-miR167e         -UGAAGCUGCCAGCAUGAUCUGA
sit-miR167f         -UGAAGCUGCCAGCAUGAUCUGA
spo-miR167b         -UGAAGCUGCCAGCAUGAUCUGA
ccl-miR167a         -UGAAGCUGCCAGCAUGAUCUGA
ccl-miR167b         -UGAAGCUGCCAGCAUGAUCUGA
gma-miR167g         -UGAAGCUGCCAGCAUGAUCUGA
bdi-miR167c-5p      -UGAAGCUGCCAGCAUGAUCUGA
bdi-miR167d-5p      -UGAAGCUGCCAGCAUGAUCUGA
mes-miR167d         -UGAAGCUGCCAGCAUGAUCUGA
mes-miR167e         -UGAAGCUGCCAGCAUGAUCUGA
mes-miR167f         -UGAAGCUGCCAGCAUGAUCUGA
bdi-miR167e-5p      -UGAAGCUGCCAGCAUGAUCUGA
ppe-miR167c         -UGAAGCUGCCAGCAUGAUCUGA
cpa-miR167d         -UGAAGCUGCCAGCAUGAUCUGA
bdi-miR167g         -UGAAGCUGCCAGCAUGAUCUGA
sbi-miR167d         -UGAAGCUGCCAGCAUGAUCUG-
sbi-miR167f         -UGAAGCUGCCAGCAUGAUCUG-
sbi-miR167g         -UGAAGCUGCCAGCAUGAUCUG-
sbi-miR167e         -UGAAGCUGCCAGCAUGAUCUG-
sbi-miR167c         -UGAAGCUGCCAGCAUGAUCUG-
zma-miR167f-5p      -UGAAGCUGCCAGCAUGAUCUG-
zma-miR167h-5p      -UGAAGCUGCCAGCAUGAUCUG-
zma-miR167i-5p      -UGAAGCUGCCAGCAUGAUCUG-
ptc-miR167e         -UGAAGCUGCCAGCAUGAUCUG-
vvi-miR167a         -UGAAGCUGCCAGCAUGAUCUG-
gma-miR167c         -UGAAGCUGCCAGCAUGAUCUG-
sbi-miR167h         -UGAAGCUGCCAGCAUGAUCUG-
zma-miR167j-5p      -UGAAGCUGCCAGCAUGAUCUG-
csi-miR167c-5p      -UGAAGCUGCCAGCAUGAUCUG-
csi-miR167a-5p      -UGAAGCUGCCAGCAUGAUCUG-
gma-miR167j         -UGAAGCUGCCAGCAUGAUCUG-
mtr-miR167b-5p      -UGAAGCUGCCAGCAUGAUCUG-
mes-miR167a         -UGAAGCUGCCAGCAUGAUCUG-
lus-miR167f         -UGAAGCUGCCAGCAUGAUCUG-
lus-miR167g         -UGAAGCUGCCAGCAUGAUCUG-
lus-miR167i         -UGAAGCUGCCAGCAUGAUCUG-
atr-miR167          -UGAAGCUGCCAGCAUGAUCUG-
pha-miR167b         -UGAAGCUGCCAGCAUGAUCU--
csi-miR167d-5p      -UGAAGCUGCCAGCAUGAUCUA-
csi-miR167e-5p      -UGAAGCUGCCAGCAUGAUCUA-
bdi-miR167f         -UGAAGCUGCCAGCAUGAUCUA-
cpa-miR167b         -UGAAGCUGCCAGCAUGAUCUA-
cpa-miR167a         -UGAAGCUGCCAGCAUGAUCUA-
ppe-miR167b         -UGAAGCUGCCAGCAUGAUCUA-
ppe-miR167a         -UGAAGCUGCCAGCAUGAUCUA-
stu-miR167d-5p      -UGAAGCUGCCAGCAUGAUCUA-
stu-miR167a-5p      -UGAAGCUGCCAGCAUGAUCUA-
stu-miR167b-5p      -UGAAGCUGCCAGCAUGAUCUA-
stu-miR167c-5p      -UGAAGCUGCCAGCAUGAUCUA-
mes-miR167c         -UGAAGCUGCCAGCAUGAUCUA-
mdm-miR167g         -UGAAGCUGCCAGCAUGAUCUA-
mdm-miR167f         -UGAAGCUGCCAGCAUGAUCUA-
mdm-miR167e         -UGAAGCUGCCAGCAUGAUCUA-
mdm-miR167d         -UGAAGCUGCCAGCAUGAUCUA-
mdm-miR167c         -UGAAGCUGCCAGCAUGAUCUA-
mdm-miR167b         -UGAAGCUGCCAGCAUGAUCUA-
lus-miR167h         -UGAAGCUGCCAGCAUGAUCUA-
lus-miR167e         -UGAAGCUGCCAGCAUGAUCUA-
lus-miR167d         -UGAAGCUGCCAGCAUGAUCUA-
lus-miR167c         -UGAAGCUGCCAGCAUGAUCUA-
bdi-miR167b         -UGAAGCUGCCAGCAUGAUCUA-
tcc-miR167b         -UGAAGCUGCCAGCAUGAUCUA-
tcc-miR167a         -UGAAGCUGCCAGCAUGAUCUA-
aly-miR167b-5p      -UGAAGCUGCCAGCAUGAUCUA-
aly-miR167a-5p      -UGAAGCUGCCAGCAUGAUCUA-
rco-miR167b         -UGAAGCUGCCAGCAUGAUCUA-
rco-miR167a         -UGAAGCUGCCAGCAUGAUCUA-
bdi-miR167a         -UGAAGCUGCCAGCAUGAUCUA-
sbi-miR167i         -UGAAGCUGCCAGCAUGAUCUA-
gma-miR167d         -UGAAGCUGCCAGCAUGAUCUA-
sly-miR167a         -UGAAGCUGCCAGCAUGAUCUA-
vvi-miR167e         -UGAAGCUGCCAGCAUGAUCUA-
vvi-miR167d         -UGAAGCUGCCAGCAUGAUCUA-
vvi-miR167b         -UGAAGCUGCCAGCAUGAUCUA-
mtr-miR167a         -UGAAGCUGCCAGCAUGAUCUA-
ptc-miR167d         -UGAAGCUGCCAGCAUGAUCUA-
ptc-miR167c         -UGAAGCUGCCAGCAUGAUCUA-
ptc-miR167b         -UGAAGCUGCCAGCAUGAUCUA-
ptc-miR167a         -UGAAGCUGCCAGCAUGAUCUA-
gma-miR167b         -UGAAGCUGCCAGCAUGAUCUA-
gma-miR167a         -UGAAGCUGCCAGCAUGAUCUA-
sbi-miR167b         -UGAAGCUGCCAGCAUGAUCUA-
sbi-miR167a         -UGAAGCUGCCAGCAUGAUCUA-
zma-miR167c-5p      -UGAAGCUGCCAGCAUGAUCUA-
zma-miR167d-5p      -UGAAGCUGCCAGCAUGAUCUA-
zma-miR167b-5p      -UGAAGCUGCCAGCAUGAUCUA-
zma-miR167a-5p      -UGAAGCUGCCAGCAUGAUCUA-
osa-miR167c-5p      -UGAAGCUGCCAGCAUGAUCUA-
osa-miR167b         -UGAAGCUGCCAGCAUGAUCUA-
osa-miR167a-5p      -UGAAGCUGCCAGCAUGAUCUA-
ath-miR167b         -UGAAGCUGCCAGCAUGAUCUA-
ath-miR167a-5p      -UGAAGCUGCCAGCAUGAUCUA-
tae-miR167a         -UGAAGCUGCCAGCAUGAUCUA-
zos-miR167a         -UGAAGCUGCCAGCAUGAUCUA-
spo-miR167a         -UGAAGCUGCCAGCAUGAUCUA-
sit-miR167j         -UGAAGCUGCCAGCAUGAUCUA-
sit-miR167i         -UGAAGCUGCCAGCAUGAUCUA-
sit-miR167g         -UGAAGCUGCCAGCAUGAUCUA-
pvi-miR167w         -UGAAGCUGCCAGCAUGAUCUA-
pvi-miR167v         -UGAAGCUGCCAGCAUGAUCUA-
pvi-miR167u         -UGAAGCUGCCAGCAUGAUCUA-
pvi-miR167t         -UGAAGCUGCCAGCAUGAUCUA-
pvi-miR167s         -UGAAGCUGCCAGCAUGAUCUA-
pvi-miR167q         -UGAAGCUGCCAGCAUGAUCUA-
pvi-miR167p         -UGAAGCUGCCAGCAUGAUCUA-
pvi-miR167o         -UGAAGCUGCCAGCAUGAUCUA-
mac-miR167r         -UGAAGCUGCCAGCAUGAUCUA-
mac-miR167q         -UGAAGCUGCCAGCAUGAUCUA-
mac-miR167p         -UGAAGCUGCCAGCAUGAUCUA-
mac-miR167o         -UGAAGCUGCCAGCAUGAUCUA-
mac-miR167n         -UGAAGCUGCCAGCAUGAUCUA-
mac-miR167m         -UGAAGCUGCCAGCAUGAUCUA-
mac-miR167l         -UGAAGCUGCCAGCAUGAUCUA-
mac-miR167k         -UGAAGCUGCCAGCAUGAUCUA-
esa-miR167d         -UGAAGCUGCCAGCAUGAUCUA-
esa-miR167c         -UGAAGCUGCCAGCAUGAUCUA-
esa-miR167b         -UGAAGCUGCCAGCAUGAUCUA-
cru-miR167b         -UGAAGCUGCCAGCAUGAUCUA-
cru-miR167a         -UGAAGCUGCCAGCAUGAUCUA-
bra-miR167d         -UGAAGCUGCCAGCAUGAUCUA-
bra-miR167b         -UGAAGCUGCCAGCAUGAUCUA-
bra-miR167a         -UGAAGCUGCCAGCAUGAUCUA-
bol-miR167b         -UGAAGCUGCCAGCAUGAUCUA-
bol-miR167a         -UGAAGCUGCCAGCAUGAUCUA-
fve-miR167a         -UGAAGCUGCCAGCAUGAUCU--
fve-miR167c         -UGAAGCUGCCAGCAUGAUCU--
fve-miR167b         -UGAAGCUGCCAGCAUGAUCU--
gma-miR167l         -UGAAGCUGCCAGCAUGAUCU--
mes-miR167b         -UGAAGCUGCCAGCAUGAUCU--
sit-miR167h         -UGAAGCUGCCAGCAUGAUCU--
pha-miR167d         -UGAAGCUGCCAGCAUGAUCU--
pha-miR167c         -UGAAGCUGCCAGCAUGAUCU--
fve-miR167d         -UGAAGCUGCCAGCAUGAUCUCA
vvi-miR167c         -UGAAGCUGCCAGCAUGAUCUC-
lus-miR167a         -UGAAGCUGCCAGCAUGAUCUC-
bra-miR167c         -UGAAGCUGCCAGCAUGAUCU--
pvi-miR167r         -UGAAGCUGCCAGCAUGAUCUUG
cru-miR167c         --UAAGCUGCCAGCAUGAUCUUG
esa-miR167a         --UAAGCUGCCAGCAUGAUCUUG
ath-miR167c-5p      --UAAGCUGCCAGCAUGAUCUUG
aly-miR167c-5p      --UAAGCUGCCAGCAUGAUCUUG
gra-miR167a         UCAGAUCAUCUUGCAGCUUCA--
gra-miR167b         UCAGAUCAUCUUGCAGCUUCA--
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