TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



bra-miR156t
Brassica rapa

Species
GGATTTGCAACAGAGAAAACTGACAGAAGAGAGTGAGCACATGCAGGCACTGTTATGTGTCCATAACTTTGCTTGTGCGTGCTCACCTCTCTTTCTGTCAGTTGCCTGAGTTCTCGTTTTCA

PmiREN
-   UU  -C   AG  AA           -     -       A        CU      U 
 GGA  UG  AAC  AG  AACUGACAGAA GAGAG UGAGCAC UGCAGGCA  GUUAUG G
 |||  ||  |||  ||  ||||||||||| ||||| ||||||| ||||||||  ||||||  
 CUU  GC  UUG  UC  UUGACUGUCUU CUCUC ACUCGUG GUGUUCGU  CAAUAC C
A   UU  UC   AG  CG           U     C       C        UU      C 

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

csi-miR156b-5p      ---UGACAGAAGAGAGUGAGCAC-
csi-miR156c-5p      ---UGACAGAAGAGAGUGAGCAC-
fve-miR156d         ---UGACAGAAGAGAGUGAGCAC-
sly-miR156d-5p      ---UGACAGAAGAGAGUGAGCAC-
atr-miR156d         ---UGACAGAAGAGAGUGAGCAC-
atr-miR156b         ---UGACAGAAGAGAGUGAGCAC-
cpa-miR156d         ---UGACAGAAGAGAGUGAGCAC-
cpa-miR156c         ---UGACAGAAGAGAGUGAGCAC-
cpa-miR156b         ---UGACAGAAGAGAGUGAGCAC-
cpa-miR156a         ---UGACAGAAGAGAGUGAGCAC-
ppe-miR156e         ---UGACAGAAGAGAGUGAGCAC-
ppe-miR156d         ---UGACAGAAGAGAGUGAGCAC-
ppe-miR156c         ---UGACAGAAGAGAGUGAGCAC-
stu-miR156k-5p      ---UGACAGAAGAGAGUGAGCAC-
stu-miR156j-5p      ---UGACAGAAGAGAGUGAGCAC-
stu-miR156i-5p      ---UGACAGAAGAGAGUGAGCAC-
stu-miR156h-5p      ---UGACAGAAGAGAGUGAGCAC-
stu-miR156g-5p      ---UGACAGAAGAGAGUGAGCAC-
stu-miR156e         ---UGACAGAAGAGAGUGAGCAC-
bdi-miR156i-5p      ---UGACAGAAGAGAGUGAGCAC-
bdi-miR156h-5p      ---UGACAGAAGAGAGUGAGCAC-
bdi-miR156g-5p      ---UGACAGAAGAGAGUGAGCAC-
bdi-miR156f-5p      ---UGACAGAAGAGAGUGAGCAC-
bdi-miR156e-5p      ---UGACAGAAGAGAGUGAGCAC-
mes-miR156g         ---UGACAGAAGAGAGUGAGCAC-
mes-miR156f         ---UGACAGAAGAGAGUGAGCAC-
mes-miR156e         ---UGACAGAAGAGAGUGAGCAC-
mes-miR156d         ---UGACAGAAGAGAGUGAGCAC-
mes-miR156c         ---UGACAGAAGAGAGUGAGCAC-
mes-miR156b         ---UGACAGAAGAGAGUGAGCAC-
mes-miR156a         ---UGACAGAAGAGAGUGAGCAC-
mdm-miR156o         ---UGACAGAAGAGAGUGAGCAC-
mdm-miR156n         ---UGACAGAAGAGAGUGAGCAC-
aly-miR156f-5p      ---UGACAGAAGAGAGUGAGCAC-
csi-miR156a-5p      ---UGACAGAAGAGAGUGAGCAC-
tcc-miR156b         ---UGACAGAAGAGAGUGAGCAC-
tcc-miR156c         ---UGACAGAAGAGAGUGAGCAC-
tcc-miR156d         ---UGACAGAAGAGAGUGAGCAC-
tcc-miR156g         ---UGACAGAAGAGAGUGAGCAC-
gma-miR156h         ---UGACAGAAGAGAGUGAGCAC-
bdi-miR156b-5p      ---UGACAGAAGAGAGUGAGCAC-
bdi-miR156c         ---UGACAGAAGAGAGUGAGCAC-
bdi-miR156d-5p      ---UGACAGAAGAGAGUGAGCAC-
lus-miR156g         ---UGACAGAAGAGAGUGAGCAC-
lus-miR156a         ---UGACAGAAGAGAGUGAGCAC-
gma-miR156u         ---UGACAGAAGAGAGUGAGCAC-
gma-miR156v         ---UGACAGAAGAGAGUGAGCAC-
gma-miR156w         ---UGACAGAAGAGAGUGAGCAC-
gma-miR156x         ---UGACAGAAGAGAGUGAGCAC-
gma-miR156y         ---UGACAGAAGAGAGUGAGCAC-
mdm-miR156a         ---UGACAGAAGAGAGUGAGCAC-
mdm-miR156b         ---UGACAGAAGAGAGUGAGCAC-
mdm-miR156c         ---UGACAGAAGAGAGUGAGCAC-
mdm-miR156d         ---UGACAGAAGAGAGUGAGCAC-
mdm-miR156e         ---UGACAGAAGAGAGUGAGCAC-
mdm-miR156f         ---UGACAGAAGAGAGUGAGCAC-
mdm-miR156g         ---UGACAGAAGAGAGUGAGCAC-
mdm-miR156h         ---UGACAGAAGAGAGUGAGCAC-
mdm-miR156i         ---UGACAGAAGAGAGUGAGCAC-
mdm-miR156j         ---UGACAGAAGAGAGUGAGCAC-
mdm-miR156k         ---UGACAGAAGAGAGUGAGCAC-
mdm-miR156l         ---UGACAGAAGAGAGUGAGCAC-
mdm-miR156m         ---UGACAGAAGAGAGUGAGCAC-
cru-miR156a         ---UGACAGAAGAGAGUGAGCACA
bra-miR156h         ----GACAGAAGAGAGUGAGCACA
cru-miR156b         ---UGACAGAAGAGAGUGAGCACA
cru-miR156c         ---UGACAGAAGAGAGUGAGCACA
cru-miR156d         ---UGACAGAAGAGAGUGAGCACA
mac-miR156a         ---UGACAGAAGAGAGUGAGCACA
mac-miR156b         ---UGACAGAAGAGAGUGAGCACA
mac-miR156c         ---UGACAGAAGAGAGUGAGCACA
mac-miR156d         ---UGACAGAAGAGAGUGAGCACA
mac-miR156h         ---UGACAGAAGAGAGUGAGCACA
mac-miR156k         ---UGACAGAAGAGAGUGAGCACA
mac-miR156l         ---UGACAGAAGAGAGUGAGCACA
mac-miR156p         ---UGACAGAAGAGAGUGAGCACA
mac-miR156r         ---UGACAGAAGAGAGUGAGCACA
mac-miR156t         ---UGACAGAAGAGAGUGAGCACA
mac-miR156u         ---UGACAGAAGAGAGUGAGCACA
mac-miR156v         ---UGACAGAAGAGAGUGAGCACA
tae-miR156          ---UGACAGAAGAGAGUGAGCACA
hvu-miR156a         ---UGACAGAAGAGAGUGAGCACA
hvu-miR156b         ---UGACAGAAGAGAGUGAGCACA
rco-miR156a         ---UGACAGAAGAGAGUGAGCACA
rco-miR156b         ---UGACAGAAGAGAGUGAGCACA
rco-miR156c         ---UGACAGAAGAGAGUGAGCACA
rco-miR156d         ---UGACAGAAGAGAGUGAGCACA
osa-miR156e         ---UGACAGAAGAGAGUGAGCAC-
osa-miR156h-5p      ---UGACAGAAGAGAGUGAGCAC-
zma-miR156g-5p      ---UGACAGAAGAGAGUGAGCAC-
ptc-miR156f         ---UGACAGAAGAGAGUGAGCAC-
mtr-miR156i-5p      ---UGACAGAAGAGAGUGAGCAC-
vvi-miR156c         ---UGACAGAAGAGAGUGAGCAC-
aly-miR156c-5p      ---UGACAGAAGAGAGUGAGCAC-
aly-miR156e-5p      ---UGACAGAAGAGAGUGAGCAC-
aly-miR156d-5p      ---UGACAGAAGAGAGUGAGCAC-
aly-miR156a-5p      ---UGACAGAAGAGAGUGAGCAC-
aly-miR156b-5p      ---UGACAGAAGAGAGUGAGCAC-
zma-miR156l-5p      ---UGACAGAAGAGAGUGAGCAC-
sbi-miR156i         ---UGACAGAAGAGAGUGAGCAC-
sbi-miR156h         ---UGACAGAAGAGAGUGAGCAC-
sbi-miR156g         ---UGACAGAAGAGAGUGAGCAC-
sbi-miR156f         ---UGACAGAAGAGAGUGAGCAC-
vvi-miR156d         ---UGACAGAAGAGAGUGAGCAC-
vvi-miR156b         ---UGACAGAAGAGAGUGAGCAC-
ppt-miR156b         ---UGACAGAAGAGAGUGAGCAC-
ppt-miR156c         ---UGACAGAAGAGAGUGAGCAC-
mtr-miR156d-5p      ---UGACAGAAGAGAGUGAGCAC-
mtr-miR156c-5p      ---UGACAGAAGAGAGUGAGCAC-
mtr-miR156b-5p      ---UGACAGAAGAGAGUGAGCAC-
ppt-miR156a         ---UGACAGAAGAGAGUGAGCAC-
ptc-miR156e         ---UGACAGAAGAGAGUGAGCAC-
ptc-miR156d         ---UGACAGAAGAGAGUGAGCAC-
ptc-miR156c         ---UGACAGAAGAGAGUGAGCAC-
ptc-miR156b         ---UGACAGAAGAGAGUGAGCAC-
ptc-miR156a         ---UGACAGAAGAGAGUGAGCAC-
gma-miR156a         ---UGACAGAAGAGAGUGAGCAC-
sbi-miR156b         ---UGACAGAAGAGAGUGAGCAC-
sbi-miR156c         ---UGACAGAAGAGAGUGAGCAC-
sbi-miR156a         ---UGACAGAAGAGAGUGAGCAC-
zma-miR156i-5p      ---UGACAGAAGAGAGUGAGCAC-
zma-miR156h-5p      ---UGACAGAAGAGAGUGAGCAC-
zma-miR156a-5p      ---UGACAGAAGAGAGUGAGCAC-
zma-miR156e-5p      ---UGACAGAAGAGAGUGAGCAC-
zma-miR156c         ---UGACAGAAGAGAGUGAGCAC-
zma-miR156b-5p      ---UGACAGAAGAGAGUGAGCAC-
zma-miR156f-5p      ---UGACAGAAGAGAGUGAGCAC-
zma-miR156d-5p      ---UGACAGAAGAGAGUGAGCAC-
osa-miR156j-5p      ---UGACAGAAGAGAGUGAGCAC-
osa-miR156i         ---UGACAGAAGAGAGUGAGCAC-
osa-miR156g-5p      ---UGACAGAAGAGAGUGAGCAC-
osa-miR156f-5p      ---UGACAGAAGAGAGUGAGCAC-
osa-miR156d         ---UGACAGAAGAGAGUGAGCAC-
osa-miR156c-5p      ---UGACAGAAGAGAGUGAGCAC-
osa-miR156b-5p      ---UGACAGAAGAGAGUGAGCAC-
osa-miR156a         ---UGACAGAAGAGAGUGAGCAC-
ath-miR156f-5p      ---UGACAGAAGAGAGUGAGCAC-
ath-miR156e         ---UGACAGAAGAGAGUGAGCAC-
ath-miR156d-5p      ---UGACAGAAGAGAGUGAGCAC-
ath-miR156c-5p      ---UGACAGAAGAGAGUGAGCAC-
ath-miR156b-5p      ---UGACAGAAGAGAGUGAGCAC-
ath-miR156a-5p      ---UGACAGAAGAGAGUGAGCAC-
zos-miR156e         ---UGACAGAAGAGAGUGAGCAC-
zos-miR156d         ---UGACAGAAGAGAGUGAGCAC-
zos-miR156c         ---UGACAGAAGAGAGUGAGCAC-
zos-miR156b         ---UGACAGAAGAGAGUGAGCAC-
spo-miR156b         ---UGACAGAAGAGAGUGAGCAC-
spo-miR156a         ---UGACAGAAGAGAGUGAGCAC-
sit-miR156k         ---UGACAGAAGAGAGUGAGCAC-
sit-miR156j         ---UGACAGAAGAGAGUGAGCAC-
sit-miR156i         ---UGACAGAAGAGAGUGAGCAC-
sit-miR156h         ---UGACAGAAGAGAGUGAGCAC-
sit-miR156g         ---UGACAGAAGAGAGUGAGCAC-
sit-miR156f         ---UGACAGAAGAGAGUGAGCAC-
sit-miR156d         ---UGACAGAAGAGAGUGAGCAC-
sit-miR156c         ---UGACAGAAGAGAGUGAGCAC-
sit-miR156b         ---UGACAGAAGAGAGUGAGCAC-
pha-miR156f         ---UGACAGAAGAGAGUGAGCAC-
pha-miR156e         ---UGACAGAAGAGAGUGAGCAC-
pha-miR156d         ---UGACAGAAGAGAGUGAGCAC-
pha-miR156c         ---UGACAGAAGAGAGUGAGCAC-
pha-miR156b         ---UGACAGAAGAGAGUGAGCAC-
pha-miR156a         ---UGACAGAAGAGAGUGAGCAC-
sly-miR156e-5p      ---UGAUAGAAGAGAGUGAGCAC-
mac-miR156o         ---UGACAGGAGAGAGUGAGCAC-
mac-miR156x         ---UGACAGGAGAGAGUGAGCAC-
fve-miR156h         ---UGACAGAAGAGAGUGAGCUC-
mac-miR156e         ---UGACAGAAGAGAGUGAGCACC
mac-miR156g         ---UGACAGAAGAGAGUGAGCACC
mac-miR156m         ---UGACAGAAGAGAGUGAGCACC
mac-miR156n         ---UGACAGAAGAGAGUGAGCACC
mac-miR156q         ---UGACAGAAGAGAGUGAGCACC
mac-miR156z         ---UGACAGAAGAGAGUGAGCACC
pvi-miR156s         ---UGACAGAAGAGAGUGAGCACC
bol-miR156          ---UGACAGAAGAGAGUGAGCAC-
bra-miR156f         ---UGACAGAAGAGAGUGAGCAC-
bra-miR156o         ---UGACAGAAGAGAGUGAGCAC-
esa-miR156d         ---UGACAGAAGAGAGUGAGCAC-
esa-miR156g         --UUGACAGAAGAGAGUGAGCAC-
pha-miR156g         --UUGACAGAAGAGAGUGAGCAC-
pha-miR156h         --UUGACAGAAGAGAGUGAGCAC-
pha-miR156i         --UUGACAGAAGAGAGUGAGCAC-
pvi-miR156a         --UUGACAGAAGAGAGUGAGCAC-
pvi-miR156d         --UUGACAGAAGAGAGUGAGCAC-
pvi-miR156h         --UUGACAGAAGAGAGUGAGCAC-
pvi-miR156j         --UUGACAGAAGAGAGUGAGCAC-
gma-miR156k         --UUGACAGAAGAGAGUGAGCAC-
gma-miR156n         --UUGACAGAAGAGAGUGAGCAC-
gma-miR156o         --UUGACAGAAGAGAGUGAGCAC-
fve-miR156b         --UUGACAGAAGAGAGUGAGCAC-
fve-miR156a         --UUGACAGAAGAGAGUGAGCAC-
fve-miR156c         --UUGACAGAAGAGAGUGAGCAC-
fve-miR156e         --UUGACAGAAGAGAGUGAGCAC-
bra-miR156a         ---UGACAGAAGAGAGUGAGCAC-
bra-miR156j         ---UGACAGAAGAGAGUGAGCAC-
bra-miR156q         ---UGACAGAAGAGAGUGAGCAC-
esa-miR156e         ---UGACAGAAGAGAGUGAGCAC-
mac-miR156i         ---UGACAGAAGAGAGUGAGCACG
mac-miR156j         ---UGACAGAAGAGAGUGAGCACG
mac-miR156y         ---UGACAGAAGAGAGUGAGCACG
bra-miR156b         ---UGACAGAAGAGAGUGAGCAC-
bra-miR156k         ---UGACAGAAGAGAGUGAGCAC-
bra-miR156r         ---UGACAGAAGAGAGUGAGCAC-
esa-miR156f         ---UGACAGAAGAGAGUGAGCAC-
pvi-miR156b         --GUGACAGAAGAGAGUGAGCAC-
pvi-miR156c         --GUGACAGAAGAGAGUGAGCAC-
pvi-miR156m         --GUGACAGAAGAGAGUGAGCAC-
bra-miR156c         ---UGACAGAAGAGAGUGAGCAC-
bra-miR156l         ---UGACAGAAGAGAGUGAGCAC-
bra-miR156s         ---UGACAGAAGAGAGUGAGCAC-
esa-miR156h         ---UGACAGAAGAGAGUGAGCAC-
gma-miR156q         ---UGACAGAAGAGAGUGAGCACU
gma-miR156s         ---UGACAGAAGAGAGUGAGCACU
bra-miR156e         ---UGACAGAAGAGAGUGAGCAC-
bra-miR156m         ---UGACAGAAGAGAGUGAGCAC-
bra-miR156t         ---UGACAGAAGAGAGUGAGCAC-
esa-miR156i         ---UGACAGAAGAGAGUGAGCAC-
mdm-miR156ad        ---UGACAGAAGAAAGUGAGCAC-
mdm-miR156ae        ---UGACAGAAGAAAGUGAGCAC-
vvi-miR156e         ---UGACAGAGGAGAGUGAGCAC-
mtr-miR156j         ---UGACAGAAGAGGGUGAGCAC-
ptc-miR156k         ---UGACAGAAGAGAGGGAGCAC-
vvi-miR156a         ---UGACAGAAGAGAGGGAGCAC-
zma-miR156k-5p      ---UGACAGAAGAGAGCGAGCAC-
sbi-miR156e         ---UGACAGAAGAGAGCGAGCAC-
pvi-miR156e         --CUGACAGAAGAGAGUGAGCAC-
pvi-miR156f         --CUGACAGAAGAGAGUGAGCAC-
pvi-miR156g         --CUGACAGAAGAGAGUGAGCAC-
pvi-miR156i         --CUGACAGAAGAGAGUGAGCAC-
pvi-miR156k         --CUGACAGAAGAGAGUGAGCAC-
pvi-miR156l         --CUGACAGAAGAGAGUGAGCAC-
pvi-miR156n         --CUGACAGAAGAGAGUGAGCAC-
pvi-miR156o         --CUGACAGAAGAGAGUGAGCAC-
ath-miR156g         ---CGACAGAAGAGAGUGAGCAC-
smo-miR156a         ---CGACAGAAGAGAGUGAGCAC-
aly-miR156g-5p      ---CGACAGAAGAGAGUGAGCAC-
pvi-miR156q         ---UGACAGAAGAGAGUGAGCAU-
osa-miR156l-5p      ---CGACAGAAGAGAGUGAGCAUA
stu-miR156f-5p      --CUGACAGAAGAGAGUGAGCA--
vvi-miR156h         ---UGACAGAAGAGAGAGAGCAU-
ath-miR156i         ---UGACAGAAGAGAGAGAGCAG-
ath-miR156b-3p      UGCUCACCUCUCUUUCUGUCAGU-
aly-miR156b-3p      -GCUCACCUCUCUUUCUGUCAGU-
zma-miR156b-3p      -GCUCACC-CUCUAUCUGUCAGU-
osa-miR156c-3p      -GCUCACUUCUCUCUCUGUCAGC-
osa-miR156g-3p      -GCUCACUUCUCUCUCUGUCAGC-
zma-miR156a-3p      -GCUCACUUCUCUCUCUGUCAGU-
bdi-miR156g-3p      -GCUCACC-CUCUCUCUGUCAGC-
bdi-miR156i-3p      -GCUCACC-CUCUCUCUGUCAGC-
osa-miR156f-3p      -GCUCACUUCUCUUUCUGUCAGC-
osa-miR156h-3p      -GCUCACUUCUCUUUCUGUCAGC-
osa-miR156l-3p      -GCUCACUUCUCUUUCUGUCAGC-
zma-miR156d-3p      -GCUCACUUCUCUUUCUGUCAGC-
zma-miR156f-3p      -GCUCACUUCUCUUUCUGUCAGC-
zma-miR156g-3p      -GCUCACUUCUCUUUCUGUCAGC-
mtr-miR156i-3p      UGCUCACUUCUCUUUCUGUCAUC-
stu-miR156f-3p      --CUCACUUCUCUUUCUGUCAAUC
mtr-miR156b-3p      UGCUCACU-CUCUAUCUGUCACC-
ath-miR156a-3p      -GCUCACUGCUCUUUCUGUCAGA-
csi-miR156b-3p      -GCUCACUGCUCUUUCUGUCAGCU
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