TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

bol-miR169d

Organism

Brassica oleracea

Species

Mature miRNA Sequence(5'-3')

GAGCCAAAGAUGACUUGCCGA

PmiREN

Precursor miRNA Sequence(5'-3')

GGAAAACAGAGAATGATATTGAGCCAAAGATGACTTGCCGACCAATGAATCTAAAACTGATTTTGGCAACCGGCAAGTTGACTTTGGCTCTGTTTCCTTCTCTTCTTTTCGA

PmiREN

Precursor miRNA Structure(5'-3') 

--     AC      U  U  U         AU         ---A   AU     UA 
  GGAAA  AGAGAA GA AU GAGCCAAAG  GACUUGCCG    CCA  GAAUC  A
  |||||  |||||| || || |||||||||  |||||||||    |||  |||||  A
  CUUUU  UCUCUU CU UG CUCGGUUUC  UUGAACGGC    GGU  UUUAG  U
AG     CU      C  U  U         AG         CAAC   --     UC

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

bra-miR169s         UGAGCCAAGGAUGACUUGCCG---
cru-miR169a         UGAGCCAAGGAUGACUUGCCG---
cru-miR169b         UGAGCCAAGGAUGACUUGCCG---
cru-miR169c         UGAGCCAAGGAUGACUUGCCG---
esa-miR169c         UGAGCCAAGGAUGACUUGCCG---
ath-miR169d         UGAGCCAAGGAUGACUUGCCG---
ath-miR169e         UGAGCCAAGGAUGACUUGCCG---
ath-miR169f-5p      UGAGCCAAGGAUGACUUGCCG---
ath-miR169g-5p      UGAGCCAAGGAUGACUUGCCG---
ptc-miR169n-5p      UGAGCCAAGGAUGACUUGCCG---
rco-miR169c         UGAGCCAAGGAUGACUUGCCG---
aly-miR169d-5p      UGAGCCAAGGAUGACUUGCCG---
aly-miR169e-5p      UGAGCCAAGGAUGACUUGCCG---
aly-miR169f-5p      UGAGCCAAGGAUGACUUGCCG---
aly-miR169g-5p      UGAGCCAAGGAUGACUUGCCG---
tcc-miR169m         UGAGCCAAGGAUGACUUGCCG---
gma-miR169p         UGAGCCAAGGAUGACUUGCCG---
lus-miR169e         UGAGCCAAGGAUGACUUGCCG---
lus-miR169i         UGAGCCAAGGAUGACUUGCCG---
mes-miR169h         UGAGCCAAGGAUGACUUGCCG---
bra-miR169d         UGAGCCAAGGAUGACUUGCCU---
fve-miR169e         UGAGCCAAGGAUGACUUGCCU---
ppe-miR169e-5p      UGAGCCAAGGAUGACUUGCCA---
ppe-miR169d         UGAGCCAAGGAUGACUUGCCA---
csi-miR169o-5p      -CAGCCAAGGAUGACUUGCCGG--
csi-miR169r-5p      -CAGCCAAGGAUGACUUGCCGG--
csi-miR169n-5p      -CAGCCAAGGAUGACUUGCCGG--
csi-miR169m-5p      -CAGCCAAGGAUGACUUGCCGG--
csi-miR169k-5p      -CAGCCAAGGAUGACUUGCCGG--
csi-miR169g-5p      -CAGCCAAGGAUGACUUGCCGG--
mdm-miR169j         -CAGCCAAGGAUGACUUGCCGG--
mdm-miR169i         -CAGCCAAGGAUGACUUGCCGG--
mdm-miR169h         -CAGCCAAGGAUGACUUGCCGG--
mdm-miR169g         -CAGCCAAGGAUGACUUGCCGG--
ppe-miR169c         -CAGCCAAGGAUGACUUGCCGG--
ppe-miR169b         -CAGCCAAGGAUGACUUGCCGG--
ppe-miR169a         -CAGCCAAGGAUGACUUGCCGG--
mtr-miR169l-5p      -CAGCCAAGGAUGACUUGCCGG--
mes-miR169e         -CAGCCAAGGAUGACUUGCCGG--
mes-miR169d         -CAGCCAAGGAUGACUUGCCGG--
mes-miR169c         -CAGCCAAGGAUGACUUGCCGG--
mes-miR169b         -CAGCCAAGGAUGACUUGCCGG--
mes-miR169a         -CAGCCAAGGAUGACUUGCCGG--
mdm-miR169a         -CAGCCAAGGAUGACUUGCCGG--
lus-miR169j         -CAGCCAAGGAUGACUUGCCGG--
lus-miR169h         -CAGCCAAGGAUGACUUGCCGG--
lus-miR169f         -CAGCCAAGGAUGACUUGCCGG--
gma-miR169m         -CAGCCAAGGAUGACUUGCCGG--
bdi-miR169f         -CAGCCAAGGAUGACUUGCCGG--
bdi-miR169c-5p      -CAGCCAAGGAUGACUUGCCGG--
gma-miR169g         -CAGCCAAGGAUGACUUGCCGG--
gma-miR169f         -CAGCCAAGGAUGACUUGCCGG--
tcc-miR169l         -CAGCCAAGGAUGACUUGCCGG--
tcc-miR169k         -CAGCCAAGGAUGACUUGCCGG--
tcc-miR169b         -CAGCCAAGGAUGACUUGCCGG--
aly-miR169c-5p      -CAGCCAAGGAUGACUUGCCGG--
aly-miR169b-5p      -CAGCCAAGGAUGACUUGCCGG--
rco-miR169b         -CAGCCAAGGAUGACUUGCCGG--
rco-miR169a         -CAGCCAAGGAUGACUUGCCGG--
zma-miR169r-5p      -CAGCCAAGGAUGACUUGCCGG--
sbi-miR169k         -CAGCCAAGGAUGACUUGCCGG--
sly-miR169a         -CAGCCAAGGAUGACUUGCCGG--
vvi-miR169w         -CAGCCAAGGAUGACUUGCCGG--
vvi-miR169s         -CAGCCAAGGAUGACUUGCCGG--
vvi-miR169k         -CAGCCAAGGAUGACUUGCCGG--
vvi-miR169j         -CAGCCAAGGAUGACUUGCCGG--
vvi-miR169c         -CAGCCAAGGAUGACUUGCCGG--
vvi-miR169a         -CAGCCAAGGAUGACUUGCCGG--
mtr-miR169b         -CAGCCAAGGAUGACUUGCCGG--
mtr-miR169g         -CAGCCAAGGAUGACUUGCCGG--
ptc-miR169p         -CAGCCAAGGAUGACUUGCCGG--
ptc-miR169h         -CAGCCAAGGAUGACUUGCCGG--
ptc-miR169g         -CAGCCAAGGAUGACUUGCCGG--
ptc-miR169f         -CAGCCAAGGAUGACUUGCCGG--
ptc-miR169e         -CAGCCAAGGAUGACUUGCCGG--
ptc-miR169d         -CAGCCAAGGAUGACUUGCCGG--
zma-miR169c-5p      -CAGCCAAGGAUGACUUGCCGG--
gma-miR169a         -CAGCCAAGGAUGACUUGCCGG--
sbi-miR169b         -CAGCCAAGGAUGACUUGCCGG--
osa-miR169c         -CAGCCAAGGAUGACUUGCCGG--
osa-miR169b         -CAGCCAAGGAUGACUUGCCGG--
ath-miR169c         -CAGCCAAGGAUGACUUGCCGG--
ath-miR169b-5p      -CAGCCAAGGAUGACUUGCCGG--
spo-miR169b         -CAGCCAAGGAUGACUUGCCGG--
spo-miR169a         -CAGCCAAGGAUGACUUGCCGG--
sit-miR169e         -CAGCCAAGGAUGACUUGCCGG--
sit-miR169d         -CAGCCAAGGAUGACUUGCCGG--
sit-miR169c         -CAGCCAAGGAUGACUUGCCGG--
sit-miR169b         -CAGCCAAGGAUGACUUGCCGG--
sit-miR169a         -CAGCCAAGGAUGACUUGCCGG--
pvi-miR169d         -CAGCCAAGGAUGACUUGCCGG--
mac-miR169j         -CAGCCAAGGAUGACUUGCCGG--
mac-miR169g         -CAGCCAAGGAUGACUUGCCGG--
mac-miR169e         -CAGCCAAGGAUGACUUGCCGG--
mac-miR169d         -CAGCCAAGGAUGACUUGCCGG--
mac-miR169c         -CAGCCAAGGAUGACUUGCCGG--
mac-miR169b         -CAGCCAAGGAUGACUUGCCGG--
bra-miR169c         -CAGCCAAGGAUGACUUGCCGG--
bra-miR169b         -CAGCCAAGGAUGACUUGCCGG--
bra-miR169a         -CAGCCAAGGAUGACUUGCCGG--
bra-miR169h         -CAGCCAAGGAUGACUUGCCG---
bra-miR169j         GCAGCCAAGGAUGACUUGCCG---
gma-miR169u         -CAGCCAAGGAUGACUUGCCGU--
ptc-miR169s         UCAGCCAAGGAUGACUUGCCG---
bol-miR169a         -GAGCCAAGGAUGACUUGCCAA--
zos-miR169c         -CAGCCAAGGAUGACUUGCCAA--
ptc-miR169ab        -CAGCCAAGGAAGACUUGCCC---
gma-miR169v         -CAGCCAAGGAUGACUUGCC----
bra-miR169l         -CAGCCAAGGAUGACUUGCCGA--
cru-miR169d         -CAGCCAAGGAUGACUUGCCGA--
esa-miR169a         -CAGCCAAGGAUGACUUGCCGA--
mac-miR169h         -CAGCCAAGGAUGACUUGCCGA--
mac-miR169k         -CAGCCAAGGAUGACUUGCCGA--
spo-miR169d         -CAGCCAAGGAUGACUUGCCGA--
ath-miR169a-5p      -CAGCCAAGGAUGACUUGCCGA--
osa-miR169a         -CAGCCAAGGAUGACUUGCCGA--
zma-miR169a-5p      -CAGCCAAGGAUGACUUGCCGA--
zma-miR169b-5p      -CAGCCAAGGAUGACUUGCCGA--
sbi-miR169a         -CAGCCAAGGAUGACUUGCCGA--
mtr-miR169a         -CAGCCAAGGAUGACUUGCCGA--
ptc-miR169a         -CAGCCAAGGAUGACUUGCCGA--
ptc-miR169b-5p      -CAGCCAAGGAUGACUUGCCGA--
ptc-miR169c         -CAGCCAAGGAUGACUUGCCGA--
vvi-miR169f         -CAGCCAAGGAUGACUUGCCGA--
vvi-miR169g         -CAGCCAAGGAUGACUUGCCGA--
gma-miR169b         -CAGCCAAGGAUGACUUGCCGA--
sly-miR169c         -CAGCCAAGGAUGACUUGCCGA--
aly-miR169a-5p      -CAGCCAAGGAUGACUUGCCGA--
tcc-miR169a         -CAGCCAAGGAUGACUUGCCGA--
tcc-miR169c         -CAGCCAAGGAUGACUUGCCGA--
tcc-miR169e         -CAGCCAAGGAUGACUUGCCGA--
bdi-miR169a-5p      -CAGCCAAGGAUGACUUGCCGA--
lus-miR169g         -CAGCCAAGGAUGACUUGCCGA--
lus-miR169l         -CAGCCAAGGAUGACUUGCCGA--
mes-miR169g         -CAGCCAAGGAUGACUUGCCGA--
ptc-miR169t         -GAGCCAAGAAUGACUUGCCGG--
ptc-miR169aa        -GAGCCAAGAAUGACUUGUCGG--
mes-miR169i         -GAGCCAAGAAUGACUUGCCGG--
mes-miR169j         -GAGCCAAGAAUGACUUGCCGG--
mes-miR169k         -GAGCCAAGAAUGACUUGCCGG--
csi-miR169a         -GAGCCAAGAAUGACUUGCCGA--
mes-miR169n         -GAGCCAAGAAUGACUUGCCGA--
fve-miR169f         UGAGCCAAGAAUGACUUGCUG---
spo-miR169c         --AGCCAAGAAUGACUUGCCGGC-
gma-miR169j-5p      -UAGCCAAGAAUGACUUGCCGG--
spo-miR169e         -CAGCCAAGAAUGACUUGCCGG--
gma-miR169k         -CAGCCAAGAAUGACUUGCCGG--
gma-miR169l-5p      -CAGCCAAGAAUGACUUGCCGG--
mes-miR169l         -CAGCCAAGAAUGACUUGCCGG--
mes-miR169m         -CAGCCAAGAAUGACUUGCCGG--
cpa-miR169          -CAGCCAAGAAUGACUUGCCG---
ptc-miR169z         -CAGCCAAGAAUGAUUUGCCGG--
vvi-miR169d         -CAGCCAAGAAUGAUUUGCCGG--
mtr-miR169c         -CAGCCAAGGGUGAUUUGCCGG--
gma-miR169n-5p      -CAGCCAAGGGUGAUUUGCCGG--
pha-miR169d         --AGCCAAGGAUGACUUGCCGGC-
pha-miR169e         --AGCCAAGGAUGACUUGCCGGC-
gma-miR169e         --AGCCAAGGAUGACUUGCCGG--
mtr-miR169d-5p      -AAGCCAAGGAUGACUUGCCGG--
gma-miR169s-5p      -AAGCCAAGGAUGACUUGCCGG--
mac-miR169m         CAAGCCAAGGAUGACUUGCCUG--
gma-miR169c         -AAGCCAAGGAUGACUUGCCGA--
mac-miR169f         -UAGCCAAGGAUGACUUGCCGG--
mac-miR169i         -UAGCCAAGGAUGACUUGCCGG--
pvi-miR169a         -UAGCCAAGGAUGACUUGCCGG--
pvi-miR169b         -UAGCCAAGGAUGACUUGCCGG--
pvi-miR169c         -UAGCCAAGGAUGACUUGCCGG--
sit-miR169f         -UAGCCAAGGAUGACUUGCCGG--
osa-miR169e         -UAGCCAAGGAUGACUUGCCGG--
sbi-miR169e         -UAGCCAAGGAUGACUUGCCGG--
sbi-miR169j         -UAGCCAAGGAUGACUUGCCGG--
bdi-miR169b         -UAGCCAAGGAUGACUUGCCGG--
zma-miR169p-5p      -UAGCCAAGGAUGACUUGCCGG--
mes-miR169f         -UAGCCAAGGAUGACUUGCCGG--
mdm-miR169c         -UAGCCAAGGAUGACUUGCCCG--
ptc-miR169x         -UAGCCAAGGAUGACUUGCUCG--
mdm-miR169d         -UAGCCAAGGAUGACUUGCCCG--
mes-miR169r         -UAGCCAAGGAUGACUUGCCCG--
mes-miR169t         -UAGCCAAGGAUGACUUGCCCG--
mes-miR169v         -UAGCCAAGGAUGACUUGCCCG--
mes-miR169x         -UAGCCAAGGAUGACUUGCCCG--
mes-miR169z         -UAGCCAAGGAUGACUUGCCCG--
vvi-miR169e         -UAGCCAAGGAUGACUUGCCUGC-
bdi-miR169k-5p      -UAGCCAAGGAUGAUUUGCCUGU-
sly-miR169e-5p      -UAGCCAAGGAUGACUUGCCUUU-
bdi-miR169m         -UAGCCAAGGAUGACUUGCCG---
ppe-miR169k         -GAGCCAAGGAUGAAUUGCCGG--
ppe-miR169l         -GAGCCAAGGAUGAAUUGCCGG--
osa-miR169d         -UAGCCAAGGAUGAAUUGCCGG--
bdi-miR169l         -UAGCCAAGGAUGAAUUGCCGG--
vvi-miR169v         -AAGCCAAGGAUGAAUUGCCGG--
mtr-miR169e-5p      -GAGCCAAGGAUGACUUGCCGG--
vvi-miR169m         -GAGCCAAGGAUGACUUGCCGG--
vvi-miR169p         -GAGCCAAGGAUGACUUGCCGG--
vvi-miR169n         -GAGCCAAGGAUGACUUGCCGG--
vvi-miR169q         -GAGCCAAGGAUGACUUGCCGG--
bol-miR169f         UGAGCCAAAGAUGACUUGCC----
bol-miR169g         UGAGCCAAAGAUGACUUGCC----
bra-miR169q         UGAGCCAAAGAUGACUUGCCG---
bra-miR169r         UGAGCCAAAGAUGACUUGCCG---
bra-miR169t         UGAGCCAAAGAUGACUUGCCG---
bra-miR169u         UGAGCCAAAGAUGACUUGCCG---
bra-miR169v         UGAGCCAAAGAUGACUUGCCG---
bra-miR169w         UGAGCCAAAGAUGACUUGCCG---
esa-miR169b         UGAGCCAAAGAUGACUUGCCG---
mtr-miR169h         UGAGCCAAAGAUGACUUGCCGG--
mtr-miR169i         UGAGCCAAAGAUGACUUGCCGG--
bol-miR169b         -GAGCCAAAGAUGACUUGCCGA--
bol-miR169c         -GAGCCAAAGAUGACGUGCCGA--
bol-miR169d         -GAGCCAAAGAUGACUUGCCGA--
bol-miR169e         -GAGCCAAAGAUGACUUGCCGA--
vvi-miR169r         UGAGUCAAGGAUGACUUGCCG---
vvi-miR169u         UGAGUCAAGGAUGACUUGCCG---
tcc-miR169n         UGAGUCAAGAAUGACUUGCCG---
vvi-miR169t         CGAGUCAAGGAUGACUUGCCG---
vvi-miR169l         -GAGCCAAGGAUGACUUGCCGU--
vvi-miR169i         -GAGCCAAGGAUGACUGGCCGU--
vvi-miR169o         -GAGCCAAGGAUGACUUGCCGC--
gma-miR169d         UGAGCCAAGGAUGACUUGCCGGU-
vvi-miR169b         UGAGCCAAGGAUGGCUUGCCG---
vvi-miR169h         UGAGCCAAGGAUGGCUUGCCG---
gma-miR169o         UGAGCCA-GGAUGGCUUGCCGGC-
gma-miR169i-5p      UGAGCCG-GGAUGGCUUGCCGGCA
gma-miR169r         UGAGCCA-GGAUGGCUUGCCGGC-
mtr-miR169k         UGAGCCA-GGAUGGCUUGCCGG--
mtr-miR169j         UGAGCCA-GGAUGACUUGCCGG--
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