TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

atr-miR8579

Organism

Amborella trichopoda

Species

Mature miRNA Sequence(5'-3')

GUGAUGUAGCCCCGUUUAAGAAGG

miRBase

Precursor miRNA Sequence(5'-3')

CCUUCUUACACGGGGCAUCAUCACCUCUAAUACUGGCAAGAUGUUUAUUGAAUCUAUUUUUAGUGGCAUUAGAAAUAUGUCCACAAAAUUUGCACAUGAUUUUGUUUUUGUCAUUCUUGACCGAGUUAACACAAUACUUCCAUCCUAAAGUUUUGGAAAAAAAAGUUUAGGAAGCUUCUUCGAACUCAGAUACGAAUGAGAAAAAUAAAUUAUGUGCAAUUUUUGUGGACAUAUGCCUAAUGUCGGCAUAAAUUGAACAUCUUCUCGGUUUUAGUGGUGAUGUAGCCCCGUUUAAGAAGG

miRBase

Precursor miRNA Structure(5'-3') 

        C       AU       U    U     C          UUGAAUCU    UUAG         AA              U             U      G      U  A C     AACACAAUA  UCCA       G    GG 
CCUUCUUA ACGGGGC  CAUCACC CUAA ACUGG AAGAUGUUUA        AUUU    UGGCAUUAG  AUAUGUCCACAAAA UUGCACAUGAUUU GUUUUU UCAUUC UG C GAGUU         CU    UCCUAAA UUUU  A
|||||||| |||||||  ||||||| |||| ||||| ||||||||||        ||||    |||||||||  |||||||||||||| ||||||||||||| |||||| |||||| || | |||||         ||    ||||||| ||||   
GGAAGAAU UGCCCCG  GUAGUGG GAUU UGGCU UUCUACAAGU        UAAA    GCUGUAAUC  UAUACAGGUGUUUU AACGUGUAUUAAA UAAAAA AGUAAG AU G CUCAA         GA    AGGAUUU AAAA  A
        U       AU       U    U     C          --------    UACG         CG              U             -      G      C  A A     -GCUUCUUC  ----       G    AA

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

atr-miR8579      GUGAUGUAGCCCCGUUUAAGAAGG
osa-miR6251      --UGUGUAGCCACAUUGUAAGGG-
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