TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

atr-miR828

Organism

Amborella trichopoda

Species

Mature miRNA Sequence(5'-3')

UGAUACUCAUUUCAGCAAGCAA

miRBase

Precursor miRNA Sequence(5'-3')

CUCCUCUGACUAAAGUUUCUUGCUCAAAUGAGUAUUCCAAUCUGCUUUCUCUCCCUACAUACAAGCUUGAUUUUUGGGGCAUGAGAUGGGCUCUGUGAUACUCAUUUCAGCAAGCAACCUUACACUGGAG

miRBase

Precursor miRNA Structure(5'-3') 

    UC  AC   A   U      C           C  AUCU    -    --U     -----  UAC 
CUCC  UG  UAA GUU CUUGCU AAAUGAGUAUU CA    GCUU UCUC   CCCUA     CA   A
||||  ||  ||| ||| |||||| ||||||||||| ||    |||| ||||   |||||     ||    
GAGG  AC  AUU CAA GAACGA UUUACUCAUAG GU    CGGG AGAG   GGGGU     GU   C
    UC  --   C   C      C           U  --CU    U    UAC     UUUUA  UCG

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

aly-miR828-3p      AGAUGCUCAUUUGAGCAAGCAA
atr-miR828         UGAUACUCAUUUCAGCAAGCAA
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