TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

ath-miR862-3p

Organism

Arabidopsis thaliana

Species

Mature miRNA Sequence(5'-3')

AUAUGCUGGAUCUACUUGAAG

miRBase

Precursor miRNA Sequence(5'-3')

ACAGUAGUUUUCCAAUAGGUCGAGCAUGUGCUGAAACUGUGUGUACAGAGUUCUCAUAAACACACAGUUUCAGCAUAUGCUGGAUCUACUUGAAGACUACUGU

miRBase

Precursor miRNA Structure(5'-3') 

            CAA      G                      -ACA  G 
ACAGUAGUUUUC   UAGGUC AGCAUGUGCUGAAACUGUGUGU    GA U
||||||||||||   |||||| ||||||||||||||||||||||    ||  
UGUCAUCAGAAG   AUCUAG UCGUAUACGACUUUGACACACA    CU U
            UUC      G                      AAUA  C

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

ath-miR862-3p      AUAUGCUGGAUCUACUUGAAG
aly-miR862-3p      ACAUGCUGGAUCUACUUGAAG
                   * *******************