TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

ath-miR860

Organism

Arabidopsis thaliana

Species

Mature miRNA Sequence(5'-3')

UCAAUAGAUUGGACUAUGUAU

miRBase

Precursor miRNA Sequence(5'-3')

AUGUCUUGGUUAAAUUCAAUAUAUAUAGUCCAAUCUAUUGAAGUACUAGUACACCAGCUCUAAUAAGCUGAUGUGGGUAAGUAGUUCAAUAGAUUGGACUAUGUAUAUUAAAUUUGACUAAGAGAU

miRBase

Precursor miRNA Structure(5'-3') 

  G             C                         G    --AG    C     CU 
AU UCUUGGUUAAAUU AAUAUAUAUAGUCCAAUCUAUUGAA UACU    UACA CAGCU  A
|| ||||||||||||| ||||||||||||||||||||||||| ||||    |||| |||||   
UA AGAAUCAGUUUAA UUAUAUGUAUCAGGUUAGAUAACUU AUGA    GUGU GUCGA  A
  G             A                         G    AUGG    A     AU

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

aly-miR860-3p      UCAAUAGAUUGGACUAUAUAU
ath-miR860         UCAAUAGAUUGGACUAUGUAU
bra-miR860         UCAAUACAUUGGACUACAUAU
                   ****** *********  ***