TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

ath-miR859

Organism

Arabidopsis thaliana

Species

Mature miRNA Sequence(5'-3')

UCUCUCUGUUGUGAAGUCAAA

miRBase

Precursor miRNA Sequence(5'-3')

AAAGGUAGAUGUCGAAAUCUCUCUGUUGUGAAGUCAAACAUGAGUAUGAAUUAACAUUAAUGGAUCUUUUUGAUUCAUAAUACUCAUGUUUGGUUUCACAGUAGAUAGAUAUCGACGUCUAUCUUU

miRBase

Precursor miRNA Structure(5'-3') 

               A    C                          GAAUUAACAUUA       U 
AAAGGUAGAUGUCGA AUCU UCUGUUGUGAAGUCAAACAUGAGUAU            AUGGAUC U
||||||||||||||| |||| ||||||||||||||||||||||||||            ||||||| U
UUUCUAUCUGCAGCU UAGA AGAUGACACUUUGGUUUGUACUCAUA            UACUUAG G
               A    U                          -----------A       U

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

ath-miR859         UCUCUCUGUUGUGAAGUCAAA
aly-miR859-5p      UCUCUCCGUUGUAAAAUCAAA
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