TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

ath-miR831-3p

Organism

Arabidopsis thaliana

Species

Mature miRNA Sequence(5'-3')

UGAUCUCUUCGUACUCUUCUUG

miRBase

Precursor miRNA Sequence(5'-3')

GCACAAUGCGGACAGUGCUACAAGAAGAGAUUUAUAGAGUCUUAAGAGUCUCAAGAAGCGUACAAGGAGAUGAGGAGUGAAUCACCAAAACAAGUGGUUUUGGUUUGUGAAUCACCAAAACAAGUGGUUUUGGUUUGUGAAUCAGUAUGGUUUACCCAAAACACUUGUUUGGUGUGUUUACUUCUGAUCUCUUCGUACUCUUCUUGCGAUUCUAUGACACUCUACAUGUAACAUCGGCAUGGUUUACCAAAAAGCCU

miRBase

Precursor miRNA Structure(5'-3') 

----------GCACAAUGCGGACAGUGCUACAAGAAGAGAUUUAUAGAGUCUUAAGAGUCUCAAGAAGCGUACAAGGAGAUGAGGAGUGAAUCACCAAAACAAGUGGUUUUGGUUUGUGAAUC        A 
                                                                                                                           ACCAAAAC A
                                                                                                                           |||||||| G
                                                                                                                           UGGUUUUG G
UCCGAAAAACCAUUUGGUACGGCUACAAUGUACAUCUCACAGUAUCUUAGCGUUCUUCUCAUGCUUCUCUAGUCUUCAUUUGUGUGGUUUGUUCACAAAACCCAUUUGGUAUGACUAAGUGUU        G

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

ath-miR831-3p      UGAUCUCUUCGUACUCUUCUUG
aly-miR831-3p      UAAACUCCUCGUACUCUUCUUG
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