TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

ath-miR823

Organism

Arabidopsis thaliana

Species

Mature miRNA Sequence(5'-3')

UGGGUGGUGAUCAUAUAAGAU

miRBase

Precursor miRNA Sequence(5'-3')

AAUUUCAGAGAUACUAAUCCAAGAGAUGGCGGAUACGUUUUACAAUCACGAAUCUUGUAUGAUCACUAACCAUUGGAACAAUAAGAGUAUAUAAUGAGUAUAUCACCAUUUAGUUCUAGUGGGUGGUGAUCAUAUAAGAUUGGUAAUGGUAACAGUGAAACAUAUCCCCCAUCUAUUGGGAUUAAUUAGUC

miRBase

Precursor miRNA Structure(5'-3') 

AAUUUCAGAGAUAC      -AAG      C     C       ---A   ---  G                 AA          -  -UAAGA      A 
              UAAUCC    AGAUGG GGAUA GUUUUAC    AUC   AC AAUCUUGUAUGAUCACU  CCAUUGGAAC AA      GUAUAU A
              ||||||    |||||| ||||| |||||||    |||   || |||||||||||||||||  |||||||||| ||      |||||| U
              AUUAGG    UCUACC CCUAU CAAAGUG    UGG   UG UUAGAAUAUACUAGUGG  GGUGAUCUUG UU      UAUAUG G
-------CUGAUUA      GUUA      C     A       ACAA   UAA  G                 UG          A  UACCAC      A

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

aly-miR823-3p      UAGGUUGGUGAUCAUAUAGGAU
ath-miR823         -UGGGUGGUGAUCAUAUAAGAU
                     ** ************* ***